Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U4959_RS07425 Genome accession   NZ_CP141284
Coordinates   1576027..1576500 (+) Length   157 a.a.
NCBI ID   WP_324273063.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571027..1581500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS07395 (U4959_07395) kdsB 1571689..1572450 (+) 762 WP_004962209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U4959_RS07400 (U4959_07400) - 1572452..1573438 (+) 987 WP_005402538.1 DNA polymerase III subunit delta' -
  U4959_RS07405 (U4959_07405) - 1573665..1574009 (+) 345 WP_005402539.1 PilZ domain-containing protein -
  U4959_RS07410 (U4959_07410) - 1574032..1574805 (+) 774 WP_005402540.1 TatD family hydrolase -
  U4959_RS07415 (U4959_07415) - 1574844..1575452 (+) 609 WP_020899852.1 TetR/AcrR family transcriptional regulator -
  U4959_RS07420 (U4959_07420) - 1575465..1576013 (+) 549 WP_005402541.1 Tfp pilus assembly protein FimT/FimU -
  U4959_RS07425 (U4959_07425) xcpV 1576027..1576500 (+) 474 WP_324273063.1 type II secretion system minor pseudopilin GspI Machinery gene
  U4959_RS07430 (U4959_07430) xcpW 1576497..1577225 (+) 729 WP_227545354.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U4959_RS07435 (U4959_07435) gspK 1577222..1578181 (+) 960 WP_282896509.1 type II secretion system minor pseudopilin GspK -
  U4959_RS07440 (U4959_07440) - 1578288..1578884 (+) 597 WP_004954093.1 6-pyruvoyl trahydropterin synthase family protein -
  U4959_RS07445 (U4959_07445) ung 1578923..1579636 (+) 714 WP_004911491.1 uracil-DNA glycosylase -
  U4959_RS07450 (U4959_07450) - 1579633..1580757 (+) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  U4959_RS07455 (U4959_07455) tadA 1580764..1581267 (+) 504 WP_282896510.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17608.46 Da        Isoelectric Point: 10.2913

>NTDB_id=916883 U4959_RS07425 WP_324273063.1 1576027..1576500(+) (xcpV) [Acinetobacter junii strain H1]
MTNRQFSLLYKKSDSLNFQTIAEVKLHSLKIQKGFTLLEVMVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVAMN
EIATMKINQEWLEGTQSKQVTAQGETWQIDKKAQSTLSPKIQRIELQVSLYNTEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 474 bp        

>NTDB_id=916883 U4959_RS07425 WP_324273063.1 1576027..1576500(+) (xcpV) [Acinetobacter junii strain H1]
ATGACTAATCGACAATTCAGTTTGCTTTATAAAAAATCAGATAGTCTTAATTTTCAAACAATTGCTGAGGTTAAACTACA
TTCTCTCAAAATACAGAAAGGTTTTACGCTGTTAGAGGTGATGGTTGCTTTAGCTATTTTTGCGGTCGCTGCAATCGCGT
TAACTAAAGTAGCTATGCAGTATACCCAATCAACTTCAAATGCAATTTTACGTACTAAAGCCCAATTTGTGGCAATGAAT
GAAATTGCAACCATGAAAATAAATCAAGAGTGGCTTGAGGGAACACAATCTAAACAAGTGACTGCGCAGGGAGAAACTTG
GCAAATCGATAAAAAAGCACAATCAACATTAAGCCCCAAAATCCAACGTATCGAGTTACAAGTAAGTTTATATAACACTG
AACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATTCTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(71-132)

Prokaryotic N-terminal methylation motif (N_methyl)

(30-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.114

78.344

0.643