Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U7118_RS20340 Genome accession   NZ_CP141283
Coordinates   3760794..3761942 (-) Length   382 a.a.
NCBI ID   WP_017696151.1    Uniprot ID   A0AAP2M3C2
Organism   Bacillus subtilis strain DKU_09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3755794..3766942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS20310 (U7118_20310) yclO 3756511..3757458 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  U7118_RS20315 (U7118_20315) ceuB 3757451..3758401 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  U7118_RS20320 (U7118_20320) thrD 3758786..3760150 (+) 1365 WP_033883679.1 aspartate kinase -
  U7118_RS20325 (U7118_20325) yczN 3760304..3760417 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  U7118_RS20330 (U7118_20330) yczM 3760499..3760588 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  U7118_RS20335 (U7118_20335) phrC 3760688..3760810 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  U7118_RS20340 (U7118_20340) rapC 3760794..3761942 (-) 1149 WP_017696151.1 response regulator aspartate phosphatase RapC Regulator
  U7118_RS20345 (U7118_20345) yclK 3762106..3763527 (-) 1422 WP_324271385.1 two-component system sensor histidine kinase YclK -
  U7118_RS20350 (U7118_20350) yclJ 3763514..3764197 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  U7118_RS20355 (U7118_20355) yclI 3764410..3765870 (+) 1461 WP_103330346.1 ABC transporter permease -
  U7118_RS20360 (U7118_20360) yclH 3765886..3766566 (+) 681 WP_014478826.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.69 Da        Isoelectric Point: 5.0423

>NTDB_id=916855 U7118_RS20340 WP_017696151.1 3760794..3761942(-) (rapC) [Bacillus subtilis strain DKU_09]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=916855 U7118_RS20340 WP_017696151.1 3760794..3761942(-) (rapC) [Bacillus subtilis strain DKU_09]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAATTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACTTTTGAAAGCAGCAGGATCGTCAATTCACTGCCGCAAGCATACTT
TTTAATTACCTTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACCTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.215

100

0.992
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568