Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U2H22_RS20860 Genome accession   NZ_CP141265
Coordinates   4123036..4123554 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain L2D39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4118036..4128554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H22_RS20830 (U2H22_20830) - 4119235..4119615 (-) 381 WP_015418645.1 VOC family protein -
  U2H22_RS20835 (U2H22_20835) - 4119667..4120611 (-) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  U2H22_RS20840 (U2H22_20840) xth 4120674..4121432 (-) 759 WP_167340973.1 exodeoxyribonuclease III -
  U2H22_RS20845 (U2H22_20845) - 4121429..4121986 (-) 558 WP_032870836.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  U2H22_RS20850 (U2H22_20850) - 4121983..4122564 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  U2H22_RS20855 (U2H22_20855) rpsR 4122753..4122992 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  U2H22_RS20860 (U2H22_20860) ssbA 4123036..4123554 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  U2H22_RS20865 (U2H22_20865) rpsF 4123594..4123881 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  U2H22_RS20870 (U2H22_20870) ychF 4123993..4125093 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  U2H22_RS20875 (U2H22_20875) - 4125219..4127222 (-) 2004 WP_167340974.1 molybdopterin-dependent oxidoreductase -
  U2H22_RS20880 (U2H22_20880) - 4127269..4127475 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=916700 U2H22_RS20860 WP_004392979.1 4123036..4123554(-) (ssbA) [Bacillus velezensis strain L2D39]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=916700 U2H22_RS20860 WP_004392979.1 4123036..4123554(-) (ssbA) [Bacillus velezensis strain L2D39]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378