Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   U6I89_RS18490 Genome accession   NZ_CP141263
Coordinates   3629489..3630178 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624489..3635178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS18455 (U6I89_18455) flgN 3624670..3625152 (-) 483 WP_060399595.1 flagellar protein FlgN -
  U6I89_RS18460 (U6I89_18460) flgM 3625168..3625434 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  U6I89_RS18465 (U6I89_18465) - 3625514..3625933 (-) 420 WP_060399596.1 TIGR03826 family flagellar region protein -
  U6I89_RS18470 (U6I89_18470) comFC 3626006..3626728 (-) 723 WP_060399597.1 ComF family protein Machinery gene
  U6I89_RS18475 (U6I89_18475) comFB 3626692..3626988 (-) 297 WP_003235460.1 late competence protein ComFB -
  U6I89_RS18480 (U6I89_18480) comFA 3627056..3628438 (-) 1383 WP_080429123.1 ATP-dependent helicase ComFA Machinery gene
  U6I89_RS18485 (U6I89_18485) - 3628546..3629391 (-) 846 WP_060399599.1 DegV family protein -
  U6I89_RS18490 (U6I89_18490) degU 3629489..3630178 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  U6I89_RS18495 (U6I89_18495) degS 3630261..3631418 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  U6I89_RS18500 (U6I89_18500) - 3631636..3632289 (+) 654 WP_060399600.1 YigZ family protein -
  U6I89_RS18505 (U6I89_18505) - 3632289..3633446 (+) 1158 WP_060399601.1 LCP family protein -
  U6I89_RS18510 (U6I89_18510) - 3633518..3634594 (-) 1077 WP_060399602.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=916583 U6I89_RS18490 WP_003219701.1 3629489..3630178(-) (degU) [Bacillus inaquosorum strain BIM B-2002]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=916583 U6I89_RS18490 WP_003219701.1 3629489..3630178(-) (degU) [Bacillus inaquosorum strain BIM B-2002]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGCATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGTGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCCGCACATCCTCAGCATGAGGTTTACCCTGAGATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATTAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1