Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   U6I89_RS18480 Genome accession   NZ_CP141263
Coordinates   3627056..3628438 (-) Length   460 a.a.
NCBI ID   WP_080429123.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3622056..3633438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS18445 (U6I89_18445) flgL 3622228..3623124 (-) 897 WP_060399593.1 flagellar hook-associated protein FlgL -
  U6I89_RS18450 (U6I89_18450) flgK 3623134..3624651 (-) 1518 WP_060399594.1 flagellar hook-associated protein FlgK -
  U6I89_RS18455 (U6I89_18455) flgN 3624670..3625152 (-) 483 WP_060399595.1 flagellar protein FlgN -
  U6I89_RS18460 (U6I89_18460) flgM 3625168..3625434 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  U6I89_RS18465 (U6I89_18465) - 3625514..3625933 (-) 420 WP_060399596.1 TIGR03826 family flagellar region protein -
  U6I89_RS18470 (U6I89_18470) comFC 3626006..3626728 (-) 723 WP_060399597.1 ComF family protein Machinery gene
  U6I89_RS18475 (U6I89_18475) comFB 3626692..3626988 (-) 297 WP_003235460.1 late competence protein ComFB -
  U6I89_RS18480 (U6I89_18480) comFA 3627056..3628438 (-) 1383 WP_080429123.1 ATP-dependent helicase ComFA Machinery gene
  U6I89_RS18485 (U6I89_18485) - 3628546..3629391 (-) 846 WP_060399599.1 DegV family protein -
  U6I89_RS18490 (U6I89_18490) degU 3629489..3630178 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  U6I89_RS18495 (U6I89_18495) degS 3630261..3631418 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  U6I89_RS18500 (U6I89_18500) - 3631636..3632289 (+) 654 WP_060399600.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52170.17 Da        Isoelectric Point: 9.8788

>NTDB_id=916582 U6I89_RS18480 WP_080429123.1 3627056..3628438(-) (comFA) [Bacillus inaquosorum strain BIM B-2002]
MIVPAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNGYIAAQNSISINKRGYRCNRCGQNDQRYFSFYHSSGKN
QLYCRSCVMMGRVSEDVPLYSWIEEDEPNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGNWKKKLNRNKVPLAVKR
WIAFHVKEGRPVFLFVPSVSVMEKAASCFKDVNCRTAFVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNDLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=916582 U6I89_RS18480 WP_080429123.1 3627056..3628438(-) (comFA) [Bacillus inaquosorum strain BIM B-2002]
CTGATTGTGCCAGCTGAAAAGAACATTTCTTTCTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCAGTTGCTCAGAAC
TGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGGCTATATCGCCGCTCAAAACTCTATATCCATAA
ATAAACGGGGGTATAGATGTAATAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTTTTATCATTCATCTGGAAAGAAT
CAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGATGA
ACCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AGGCCATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGTGCTGGCAAAACAGAGATGCTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGACTGCGTGTTTGTATTGCGACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTATGGAGGAAGCGAGGACAAAGGGCGGTTATCTCCGCTTATGA
TTTCCACAACACATCAGCTTTTGCGATATAAAGACGCATTTGACGTTATGATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACTTAAGTGCAACACC
CCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGCTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAACCTT
TGCCAGAACCGCGCTTTGTATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAACAAAGTTCCGTTAGCTGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTATGGAAAAGGCAGCTTC
CTGCTTTAAAGATGTCAATTGCCGAACAGCGTTTGTGCATGCGGAAGATAAGCACAGAAAAGAAAAAGTACAGCAGTTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCCCAAGGTGCAGACAGGTGTA
TTAGGTGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGTCATAAAGAGCATGC
GGATGGTGATGTCATTTTCTTTCACTACGGAAAAACTAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
ACTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

91.522

100

0.915