Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U6I89_RS16520 Genome accession   NZ_CP141263
Coordinates   3238092..3238736 (-) Length   214 a.a.
NCBI ID   WP_104010190.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233092..3243736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS16485 (U6I89_16485) - 3234284..3234715 (+) 432 WP_003241054.1 Na(+)/H(+) antiporter subunit B -
  U6I89_RS16490 (U6I89_16490) - 3234715..3235056 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  U6I89_RS16495 (U6I89_16495) - 3235049..3236530 (+) 1482 WP_060399386.1 Na+/H+ antiporter subunit D -
  U6I89_RS16500 (U6I89_16500) - 3236536..3237012 (+) 477 WP_060399387.1 Na+/H+ antiporter subunit E -
  U6I89_RS16505 (U6I89_16505) - 3237012..3237296 (+) 285 WP_003241049.1 Na(+)/H(+) antiporter subunit F1 -
  U6I89_RS16510 (U6I89_16510) mnhG 3237280..3237654 (+) 375 WP_060399388.1 monovalent cation/H(+) antiporter subunit G -
  U6I89_RS16515 (U6I89_16515) - 3237693..3238073 (-) 381 WP_019259331.1 hotdog fold thioesterase -
  U6I89_RS16520 (U6I89_16520) comA 3238092..3238736 (-) 645 WP_104010190.1 two-component system response regulator ComA Regulator
  U6I89_RS16525 (U6I89_16525) comP 3238817..3241114 (-) 2298 WP_060399389.1 histidine kinase Regulator
  U6I89_RS16530 (U6I89_16530) comX 3241122..3241283 (-) 162 WP_003241045.1 competence pheromone ComX -
  U6I89_RS16535 (U6I89_16535) - 3241298..3242158 (-) 861 WP_032732270.1 polyprenyl synthetase family protein -
  U6I89_RS16540 (U6I89_16540) degQ 3242343..3242483 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  U6I89_RS16545 (U6I89_16545) - 3242663..3242830 (+) 168 WP_119914210.1 hypothetical protein -
  U6I89_RS16550 (U6I89_16550) - 3242943..3243311 (+) 369 WP_003241042.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24144.55 Da        Isoelectric Point: 4.6857

>NTDB_id=916576 U6I89_RS16520 WP_104010190.1 3238092..3238736(-) (comA) [Bacillus inaquosorum strain BIM B-2002]
MKKILVIDDHLAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=916576 U6I89_RS16520 WP_104010190.1 3238092..3238736(-) (comA) [Bacillus inaquosorum strain BIM B-2002]
ATGAAAAAGATACTAGTGATTGATGACCATCTGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAATCGAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTATTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAATCAAGAAATCGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995