Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U6I89_RS08880 Genome accession   NZ_CP141263
Coordinates   1792817..1793710 (+) Length   297 a.a.
NCBI ID   WP_060398622.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1787817..1798710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS08860 (U6I89_08860) - 1788486..1790216 (+) 1731 WP_060398620.1 hypothetical protein -
  U6I89_RS08865 (U6I89_08865) - 1790213..1790494 (+) 282 WP_003220834.1 FlhB-like flagellar biosynthesis protein -
  U6I89_RS08870 (U6I89_08870) sucC 1790668..1791825 (+) 1158 WP_060398621.1 ADP-forming succinate--CoA ligase subunit beta -
  U6I89_RS08875 (U6I89_08875) sucD 1791854..1792756 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  U6I89_RS08880 (U6I89_08880) dprA 1792817..1793710 (+) 894 WP_060398622.1 DNA-processing protein DprA Machinery gene
  U6I89_RS08885 (U6I89_08885) topA 1793895..1795970 (+) 2076 WP_003238559.1 type I DNA topoisomerase -
  U6I89_RS08890 (U6I89_08890) trmFO 1796046..1797353 (+) 1308 WP_060398623.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U6I89_RS08895 (U6I89_08895) xerC 1797421..1798335 (+) 915 WP_060398624.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32923.33 Da        Isoelectric Point: 9.8035

>NTDB_id=916547 U6I89_RS08880 WP_060398622.1 1792817..1793710(+) (dprA) [Bacillus inaquosorum strain BIM B-2002]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVFETVTRGKVKAAALKNKIEEYYPKLQRVLAAYHEQGINIIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPATKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
DQAMEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=916547 U6I89_RS08880 WP_060398622.1 1792817..1793710(+) (dprA) [Bacillus inaquosorum strain BIM B-2002]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACATCGCCCGTGTTCGAAACTGTTACTCGCGGTAAAGTAAAGGCAGCTGCATTAAAAA
ACAAAATAGAAGAATATTACCCAAAACTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGCATTAACATCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCGTATGGTATACAAGTTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCATCCACCAGCAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
GATCAAGCAATGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGCCCTATAAA
ATTAATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAAAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

92.929

100

0.929
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374
  dprA Legionella pneumophila strain ERS1305867

37.162

99.663

0.37