Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U6I89_RS00580 Genome accession   NZ_CP141263
Coordinates   106080..107456 (+) Length   458 a.a.
NCBI ID   WP_003242044.1    Uniprot ID   A0A9W5LEJ7
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101080..112456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS00560 (U6I89_00560) ctsR 101434..101898 (+) 465 WP_003242054.1 transcriptional regulator CtsR -
  U6I89_RS00565 (U6I89_00565) mcsA 101912..102469 (+) 558 WP_060397787.1 protein-arginine kinase activator protein McsA -
  U6I89_RS00570 (U6I89_00570) - 102469..103560 (+) 1092 WP_060397788.1 protein arginine kinase -
  U6I89_RS00575 (U6I89_00575) clpC 103557..105989 (+) 2433 WP_060397789.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  U6I89_RS00580 (U6I89_00580) radA 106080..107456 (+) 1377 WP_003242044.1 DNA repair protein RadA Machinery gene
  U6I89_RS00585 (U6I89_00585) disA 107460..108542 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  U6I89_RS00590 (U6I89_00590) - 108657..109757 (+) 1101 WP_003242040.1 PIN/TRAM domain-containing protein -
  U6I89_RS00595 (U6I89_00595) ispD 109772..110470 (+) 699 WP_003242038.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  U6I89_RS00600 (U6I89_00600) ispF 110463..110939 (+) 477 WP_060397790.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49496.97 Da        Isoelectric Point: 7.9805

>NTDB_id=916519 U6I89_RS00580 WP_003242044.1 106080..107456(+) (radA) [Bacillus inaquosorum strain BIM B-2002]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=916519 U6I89_RS00580 WP_003242044.1 106080..107456(+) (radA) [Bacillus inaquosorum strain BIM B-2002]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGATG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACCCAGCTTGGCGAATTT
AACAGAGTGCTCGGCGGGGGCGTCGTTAAAGGTTCACTCGTTCTAATCGGCGGCGATCCCGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGATTCATCGAACAGTGTGCTGTATATTTCGGGAGAAGAATCGGTCAAACAAA
CGAAACTGAGAGCAGACCGTCTCGGCATAAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCAGC
TCCCGGCAGTGTGTCACAGGTCAGGGAATGTACGGCTGAGCTGATGAAAATTGCAAAAACAAAAGGCATTCCGATTTTTA
TCGTAGGGCACGTGACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACTTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTTGGATCTACAAACGAAATGGGCATTTT
CGAAATGCGCGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAAGAACGCTCGGCGGGATCGGCAG
GCTCGAGCATAACTGCTTCTATGGAAGGCACAAGACCGATTCTCGTTGAAATCCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGTATGGCAACGGGAATAGACCATAACAGGGTTTCACTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCCGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGTATTGCGTCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTCTCAAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCAAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.345

100

0.993
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624