Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | U6I89_RS00575 | Genome accession | NZ_CP141263 |
| Coordinates | 103557..105989 (+) | Length | 810 a.a. |
| NCBI ID | WP_060397789.1 | Uniprot ID | - |
| Organism | Bacillus inaquosorum strain BIM B-2002 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 98557..110989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U6I89_RS00560 (U6I89_00560) | ctsR | 101434..101898 (+) | 465 | WP_003242054.1 | transcriptional regulator CtsR | - |
| U6I89_RS00565 (U6I89_00565) | mcsA | 101912..102469 (+) | 558 | WP_060397787.1 | protein-arginine kinase activator protein McsA | - |
| U6I89_RS00570 (U6I89_00570) | - | 102469..103560 (+) | 1092 | WP_060397788.1 | protein arginine kinase | - |
| U6I89_RS00575 (U6I89_00575) | clpC | 103557..105989 (+) | 2433 | WP_060397789.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| U6I89_RS00580 (U6I89_00580) | radA | 106080..107456 (+) | 1377 | WP_003242044.1 | DNA repair protein RadA | Machinery gene |
| U6I89_RS00585 (U6I89_00585) | disA | 107460..108542 (+) | 1083 | WP_003242042.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| U6I89_RS00590 (U6I89_00590) | - | 108657..109757 (+) | 1101 | WP_003242040.1 | PIN/TRAM domain-containing protein | - |
| U6I89_RS00595 (U6I89_00595) | ispD | 109772..110470 (+) | 699 | WP_003242038.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| U6I89_RS00600 (U6I89_00600) | ispF | 110463..110939 (+) | 477 | WP_060397790.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90019.51 Da Isoelectric Point: 6.1203
>NTDB_id=916518 U6I89_RS00575 WP_060397789.1 103557..105989(+) (clpC) [Bacillus inaquosorum strain BIM B-2002]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSGAGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSGAGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=916518 U6I89_RS00575 WP_060397789.1 103557..105989(+) (clpC) [Bacillus inaquosorum strain BIM B-2002]
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTTCGTTTAGGTCATAA
TAACATTGGCACTGAGCACATTTTATTAGGACTGGTACGAGAAGGAGAAGGCATTGCTGCTAAAGCTCTTCAAGCGCTTG
GACTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTAATCGGGCGCGGACAGGAAATGTCTCAAACGATTCATTAT
ACTCCAAGAGCTAAAAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTTGGTCATTCTTATGTTGGAACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGAGAAGGTGTTGCTGCGAGAGTCCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAAGTGCTCCAGCTTCTTGGAAGCAATGAAACAGGATCATCAGGAGCAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGTCTTGATCCTGTCATCGGCAGAAGCAA
GGAAATCCAGCGTGTAATCGAAGTGTTAAGCCGCAGAACGAAAAACAATCCTGTTCTCATTGGAGAACCAGGTGTAGGTA
AGACGGCGATTGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCCGAAATCTTACGTGATAAACGCGTGATG
ACATTAGACATGGGAACAGTGGTTGCCGGCACAAAATACCGCGGAGAATTTGAGGATCGCCTGAAGAAGGTCATGGACGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAACTCCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCAA
TTGATGCATCTAACATTTTAAAACCTTCGCTTGCTCGCGGTGAACTTCAATGTATTGGGGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATCCAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTGCGTGATCGATATGAAGCTCACCACCGCGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTTCCGGATAAAGCAATTGACTTGATCGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCGCCTAACTTAAAAGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGACAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTT
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTTAATATGGAAAGCATTCTTCA
CTCTCGTGTCATCGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTCAGACGTGCAAGAGCAGGGTTAAAAGACC
CTAAACGCCCAATCGGCTCATTTATTTTCTTAGGCCCTACAGGTGTAGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGCGATGAAGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATACGTAGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTTTTCAATATTCTTCTGCAAGTTCTTGAAGACGGACGGTTGACT
GATTCTAAAGGACGTACAGTCGATTTCCGCAATACCATTTTAATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAGAATCATAAAGACATGAAAGATAAAGTGATGGGTGAGCTGA
AACGTGCGTTCAGACCGGAGTTCATCAACCGGATCGATGAAATCATCGTCTTCCATTCACTTGAGAAAAAACACCTGACT
GAAATCGTGTCACTGATGTCTGATCAATTAACGAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACAGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGATCTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAGCATGTAG
AGGACCGTTTATCCGAAGAACTCCTCAGAGGAAATATTCATAAAGGACAGCATATTGTTCTCGATGTAGAAGATGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTTCGTTTAGGTCATAA
TAACATTGGCACTGAGCACATTTTATTAGGACTGGTACGAGAAGGAGAAGGCATTGCTGCTAAAGCTCTTCAAGCGCTTG
GACTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTAATCGGGCGCGGACAGGAAATGTCTCAAACGATTCATTAT
ACTCCAAGAGCTAAAAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTTGGTCATTCTTATGTTGGAACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGAGAAGGTGTTGCTGCGAGAGTCCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAAGTGCTCCAGCTTCTTGGAAGCAATGAAACAGGATCATCAGGAGCAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGTCTTGATCCTGTCATCGGCAGAAGCAA
GGAAATCCAGCGTGTAATCGAAGTGTTAAGCCGCAGAACGAAAAACAATCCTGTTCTCATTGGAGAACCAGGTGTAGGTA
AGACGGCGATTGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCCGAAATCTTACGTGATAAACGCGTGATG
ACATTAGACATGGGAACAGTGGTTGCCGGCACAAAATACCGCGGAGAATTTGAGGATCGCCTGAAGAAGGTCATGGACGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAACTCCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCAA
TTGATGCATCTAACATTTTAAAACCTTCGCTTGCTCGCGGTGAACTTCAATGTATTGGGGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATCCAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTGCGTGATCGATATGAAGCTCACCACCGCGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTTCCGGATAAAGCAATTGACTTGATCGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCGCCTAACTTAAAAGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGACAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTT
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTTAATATGGAAAGCATTCTTCA
CTCTCGTGTCATCGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTCAGACGTGCAAGAGCAGGGTTAAAAGACC
CTAAACGCCCAATCGGCTCATTTATTTTCTTAGGCCCTACAGGTGTAGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGCGATGAAGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATACGTAGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTTTTCAATATTCTTCTGCAAGTTCTTGAAGACGGACGGTTGACT
GATTCTAAAGGACGTACAGTCGATTTCCGCAATACCATTTTAATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAGAATCATAAAGACATGAAAGATAAAGTGATGGGTGAGCTGA
AACGTGCGTTCAGACCGGAGTTCATCAACCGGATCGATGAAATCATCGTCTTCCATTCACTTGAGAAAAAACACCTGACT
GAAATCGTGTCACTGATGTCTGATCAATTAACGAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACAGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGATCTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAGCATGTAG
AGGACCGTTTATCCGAAGAACTCCTCAGAGGAAATATTCATAAAGGACAGCATATTGTTCTCGATGTAGAAGATGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
99.259 |
100 |
0.993 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.374 |
99.012 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
46.602 |
100 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.359 |
100 |
0.472 |
| clpC | Streptococcus pneumoniae Rx1 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus pneumoniae D39 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.994 |
99.877 |
0.449 |
| clpC | Streptococcus mutans UA159 |
43.652 |
100 |
0.446 |
| clpE | Streptococcus mutans UA159 |
53.159 |
80.123 |
0.426 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.383 |
87.778 |
0.425 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae Rx1 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae D39 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae R6 |
53.612 |
76.914 |
0.412 |