Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   U5817_RS22045 Genome accession   NZ_CP141259
Coordinates   4708051..4709445 (-) Length   464 a.a.
NCBI ID   WP_407278829.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4703051..4714445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS22005 (U5817_21945) - 4703631..4703984 (-) 354 Protein_4333 helix-turn-helix domain-containing protein -
  U5817_RS22010 (U5817_21950) - 4704068..4705171 (+) 1104 WP_407278824.1 transposase -
  U5817_RS22015 (U5817_21955) - 4705337..4705567 (+) 231 WP_407278825.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  U5817_RS22020 (U5817_21960) - 4705555..4705953 (+) 399 WP_407278826.1 type II toxin-antitoxin system VapC family toxin -
  U5817_RS22025 (U5817_21965) - 4706141..4706485 (-) 345 WP_407278827.1 hypothetical protein -
  U5817_RS22030 (U5817_21970) - 4706482..4706781 (-) 300 WP_407278828.1 nucleotidyltransferase domain-containing protein -
  U5817_RS22035 (U5817_21975) - 4707077..4707556 (-) 480 WP_169127096.1 hypothetical protein -
  U5817_RS22040 (U5817_21980) - 4707553..4707852 (-) 300 WP_169127098.1 nucleotidyltransferase domain-containing protein -
  U5817_RS22045 (U5817_21985) pilR 4708051..4709445 (-) 1395 WP_407278829.1 sigma-54-dependent transcriptional regulator Regulator
  U5817_RS22050 (U5817_21990) - 4709442..4711010 (-) 1569 WP_407278830.1 sensor histidine kinase -
  U5817_RS22055 (U5817_21995) - 4711013..4711264 (-) 252 WP_407278831.1 PP0621 family protein -
  U5817_RS22060 (U5817_22000) - 4711420..4712577 (-) 1158 WP_407278832.1 pyridoxal phosphate-dependent aminotransferase -
  U5817_RS22065 (U5817_22005) mtnA 4712810..4713877 (+) 1068 WP_407278833.1 S-methyl-5-thioribose-1-phosphate isomerase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50785.14 Da        Isoelectric Point: 5.5198

>NTDB_id=916482 U5817_RS22045 WP_407278829.1 4708051..4709445(-) (pilR) [Aromatoleum evansii strain MAY27]
MNTSERRNRPAGIDVLVVDDEEDIREVLELSLLRMGLACDSAGTVEDARRLLAEKSYRLCLTDMRLPDGDGLDLVAHIQS
HAPGLPVAVITAFGSIETAIRALKCGAFDFVTKPVELKALRELVSHALKLQTAALAPAPGAGNATRTLIGTSPALEHLRA
QIAKLARNQAPVFIQGESGTGKEVIARLIHELGPRASAPFVPVNCGAIPPELMESEFFGHRKGAFTGAVFDKDGLFQAAR
GGTLFLDEVADLPLAMQVKLLRAIQERAVRPVGAHAEESVDVRILSASHRDLAQLVADGKFRQDLYFRINVITLRVPPLR
ERPEDIPELAAHILARLAERDGVPPHRLAPDAVAALRQHPFPGNVRELENLLERACALCDGDEIGAGDIDLHPTEGIAQP
LRPFGAAEAFVAEADVDNDEDGEDERVRILRMLDETRWNRSEAARRLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=916482 U5817_RS22045 WP_407278829.1 4708051..4709445(-) (pilR) [Aromatoleum evansii strain MAY27]
ATGAACACATCCGAACGACGCAACCGCCCTGCCGGAATCGATGTCCTCGTCGTCGACGACGAGGAGGACATCCGCGAAGT
TCTGGAACTCTCGCTGCTGCGCATGGGCCTCGCGTGCGATAGCGCCGGAACGGTCGAGGATGCGCGCCGCCTGCTGGCCG
AAAAGAGCTACCGCCTGTGCCTCACCGACATGCGCCTGCCGGACGGCGACGGGCTCGATCTGGTCGCGCACATCCAGTCG
CACGCGCCGGGCCTGCCGGTCGCCGTCATAACCGCCTTCGGCAGCATCGAGACCGCCATCCGCGCCCTGAAGTGCGGCGC
CTTCGACTTCGTCACCAAGCCGGTCGAGTTAAAGGCCCTGCGCGAGCTCGTCAGCCACGCGCTGAAACTACAGACCGCGG
CATTGGCCCCCGCGCCCGGCGCTGGCAATGCGACGCGCACCCTCATCGGCACGTCGCCGGCGCTCGAGCACCTGCGCGCG
CAGATCGCCAAGCTGGCGCGCAACCAGGCCCCCGTCTTCATCCAGGGTGAGTCCGGCACCGGCAAGGAAGTGATCGCCCG
CCTCATCCACGAGCTCGGTCCGCGCGCGTCGGCGCCCTTCGTGCCGGTGAACTGCGGCGCGATCCCGCCCGAACTCATGG
AAAGCGAGTTCTTCGGCCACCGCAAGGGCGCCTTTACCGGCGCCGTCTTCGACAAGGACGGCCTCTTCCAGGCCGCACGT
GGTGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCG
CGCCGTGCGTCCCGTCGGCGCCCATGCCGAAGAATCCGTCGATGTGCGCATCCTGTCCGCCTCGCACCGCGACCTTGCCC
AGCTCGTCGCCGACGGCAAGTTCCGCCAGGACCTCTACTTCCGCATCAACGTCATCACGCTGCGGGTGCCGCCACTGCGC
GAACGCCCGGAGGACATCCCCGAACTGGCTGCGCACATCCTCGCGCGGCTCGCCGAGCGCGACGGCGTCCCGCCGCACCG
CCTCGCGCCCGACGCCGTCGCCGCCCTCAGGCAGCATCCCTTCCCGGGCAACGTCCGCGAACTCGAAAACCTGCTCGAAC
GCGCGTGCGCGCTGTGCGACGGCGACGAGATCGGCGCGGGTGACATCGACCTGCACCCGACCGAAGGCATCGCCCAGCCC
TTGCGCCCATTCGGCGCCGCCGAAGCGTTTGTGGCCGAAGCGGATGTCGACAACGACGAGGACGGCGAGGACGAGCGCGT
GCGAATCCTGCGGATGCTCGACGAAACGCGCTGGAACCGCTCGGAGGCTGCGCGGCGTCTGGGGATGACGCTCAGGCAGT
TGCGCTATCGGCTGCAGAAGTGGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-461)

Response regulator receiver domain (Response_reg)

(15-124)

Sigma-54 interaction domain (Sigma54_activat)

(148-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.419

97.198

0.597
  pilR Acinetobacter baumannii strain A118

49.46

99.784

0.494