Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV30_RS12655 Genome accession   NZ_AP025460
Coordinates   2851607..2852212 (+) Length   201 a.a.
NCBI ID   WP_017101672.1    Uniprot ID   A0A1C3IGW3
Organism   Vibrio atlanticus strain CECT 7223     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846607..2857212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS12635 - 2846810..2847727 (-) 918 WP_065678071.1 ABC transporter ATP-binding protein -
  OCV30_RS12640 - 2848050..2849681 (-) 1632 WP_209439689.1 SulP family inorganic anion transporter -
  OCV30_RS12645 can 2849968..2850627 (+) 660 WP_009847590.1 carbonate dehydratase -
  OCV30_RS12650 hpt 2850739..2851269 (-) 531 WP_009847591.1 hypoxanthine phosphoribosyltransferase -
  OCV30_RS12655 opaR 2851607..2852212 (+) 606 WP_017101672.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV30_RS12660 lpdA 2852727..2854157 (-) 1431 WP_012604738.1 dihydrolipoyl dehydrogenase -
  OCV30_RS12665 aceF 2854400..2856304 (-) 1905 WP_065678069.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23203.39 Da        Isoelectric Point: 5.8715

>NTDB_id=91648 OCV30_RS12655 WP_017101672.1 2851607..2852212(+) (opaR) [Vibrio atlanticus strain CECT 7223]
MDSITKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSNWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRADTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91648 OCV30_RS12655 WP_017101672.1 2851607..2852212(+) (opaR) [Vibrio atlanticus strain CECT 7223]
ATGGACTCAATAACGAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATAGGCCGCGGTGGACACGCTGACATTGCCGACATCGCTCAGGTGTCAGTAGCAACAGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTTGTTCGTCAATTCTCGAACTTCCTTTCA
GACAACATTGACCTAGATATTCACGCAAAAGAAAATCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCAATTGGTTAAATGTATGGTTCGAATGGAGTGCATCAACTCGCGATGAAGTGTGGCCTCTATTTGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAACATGTTTAGCAAGGCGATTGAACGCGGCGAAGTCTGTGACGATCACGATCCTAAA
CATCTAGCAAATCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGCTGATACACAAGAAGAGCTTTC
GACCTTGACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IGW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment