Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   VKI21_RS04775 Genome accession   NZ_CP141255
Coordinates   1086607..1089366 (+) Length   919 a.a.
NCBI ID   WP_342597550.1    Uniprot ID   -
Organism   Cyanobacterium aponinum UTEX 3222     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081607..1094366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI21_RS04750 (VKI21_04750) ruvX 1081659..1082090 (+) 432 WP_015220737.1 Holliday junction resolvase RuvX -
  VKI21_RS04755 (VKI21_04755) murA 1082841..1084103 (+) 1263 WP_206602557.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  VKI21_RS04760 (VKI21_04760) hpnH 1084187..1085200 (+) 1014 WP_155084337.1 adenosyl-hopene transferase HpnH -
  VKI21_RS04765 (VKI21_04765) pilH 1085392..1085757 (+) 366 WP_155084338.1 response regulator Machinery gene
  VKI21_RS04770 (VKI21_04770) - 1086005..1086541 (+) 537 WP_015220733.1 chemotaxis protein CheW -
  VKI21_RS04775 (VKI21_04775) pilJ 1086607..1089366 (+) 2760 WP_342597550.1 methyl-accepting chemotaxis protein Machinery gene
  VKI21_RS04780 (VKI21_04780) - 1089474..1090238 (+) 765 WP_099435893.1 MlaE family lipid ABC transporter permease subunit -
  VKI21_RS04785 (VKI21_04785) - 1090293..1090499 (+) 207 WP_342597551.1 hypothetical protein -
  VKI21_RS04790 (VKI21_04790) - 1090623..1090793 (+) 171 WP_342596764.1 hypothetical protein -
  VKI21_RS04795 (VKI21_04795) - 1090765..1091412 (+) 648 WP_342596763.1 IS607 family transposase -
  VKI21_RS04800 (VKI21_04800) - 1091403..1092650 (+) 1248 WP_342596762.1 transposase -
  VKI21_RS04805 (VKI21_04805) - 1092647..1093327 (+) 681 WP_342597552.1 ion channel -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 101582.80 Da        Isoelectric Point: 3.8176

>NTDB_id=916423 VKI21_RS04775 WP_342597550.1 1086607..1089366(+) (pilJ) [Cyanobacterium aponinum UTEX 3222]
MVSETDYQERFKQARTAYLEGDLAEASFITDGIMDDYPDDPSAFLLKGHIHLRQQEYDLAQVNYQKVLDLTDHQDLVTLA
KQGLAEIEEDSEDQSLYPPEVEEPDFDDEVEEIGDDDDDNWTSSIQFDSIDWDIDDLEEEEIEDPTLQQNSPFDQSFSKN
SNNPPPTLSKSEKRTEQKKSGDDDEQDEDDTAANFIDPSLDENNFDDDINLDSASNDLLSFDFDNADIDYEQFESDSNDE
DLNQDEMQDTGAPTFVVSSEDEPELSDLEQMLTGETGFLNDLDDDLGDYSSQLEPLTAGKTSTNTGLNLEDDNMPLVPEG
EEDLFFAPDELDDIPDIDADELPVSSIFTKDNKPEQIFPNVIETDENVFDSDFDNEITGSFSFDTDKINLDLEEDISVSS
SLGDISGISSSIAINPEVEVPQGKLAKYYNFSLFTKQLVHGGVTGVVTFVIVLMVSLFQGGGKNIENTSVTTTESGGETT
EQTQETRETQEIPLPFSRTLLLSLIAGISGGASTIAMGYLMTNHIKRYTNDLQNHFESIYQGDYEIKATVYSQDEFGTLA
AGFNQMTKMIYTTTTEARKRAEETERAREDLQRQVIRLLDDVEGASRGDLTVQAEVTADVLGAVADAFNVTITNLRKIVK
QVQQAAVQVNKASTDSEVFARNQSSDALRMAEELAVTLNSVQMMTDSIQRVAENAREAEEVARSSSVTALKGGDAVERTV
AGILQIRETVSETTRKVKRLAEASQQISTIVAVISQISSRTNLLALNASIQAARAGEAGRGFAIVADEVRQLADRSAKSL
QEIEQIVLQIQTETGSVMTAMEEGIQQVRDVTERSEQAKRALEDIIQVSNRIDALVRSITADTDEQRENSRGVAKVMQAV
ELTAQATSQESQRVAGSLQNLVGIAKDLISSVERFRVDD

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=916423 VKI21_RS04775 WP_342597550.1 1086607..1089366(+) (pilJ) [Cyanobacterium aponinum UTEX 3222]
ATGGTATCAGAAACCGATTATCAAGAAAGATTTAAACAAGCTCGTACCGCTTATTTAGAAGGAGATTTAGCAGAAGCGTC
CTTCATTACTGATGGTATTATGGATGACTATCCAGATGATCCTAGTGCATTCTTACTAAAAGGTCATATTCATCTACGAC
AACAAGAATATGATTTAGCTCAAGTTAATTATCAAAAAGTCTTGGATTTAACAGATCATCAAGATTTAGTGACATTGGCT
AAACAAGGACTGGCAGAAATAGAAGAAGATAGCGAAGATCAATCTCTGTATCCTCCAGAGGTAGAAGAGCCAGATTTTGA
CGATGAAGTGGAAGAAATCGGTGACGATGATGATGATAATTGGACAAGCAGTATCCAATTTGACAGTATTGATTGGGATA
TAGATGATTTAGAAGAAGAAGAAATAGAAGATCCCACCCTACAGCAAAATTCTCCCTTTGATCAAAGTTTCTCTAAAAAT
TCCAATAATCCTCCCCCCACATTGAGTAAAAGTGAAAAACGCACAGAGCAAAAAAAATCAGGGGATGATGATGAACAGGA
TGAAGATGACACTGCCGCCAATTTTATTGACCCCTCTTTGGACGAAAACAATTTTGACGATGATATAAATTTAGATAGTG
CATCTAATGATTTGTTGAGCTTTGATTTTGATAATGCTGATATAGATTATGAACAGTTTGAAAGTGATTCTAATGATGAA
GATCTAAATCAAGATGAAATGCAAGATACAGGAGCTCCCACTTTTGTTGTGTCTAGTGAAGATGAACCTGAATTGAGCGA
TTTAGAACAAATGTTGACGGGGGAGACTGGTTTCCTTAATGATTTAGATGATGACTTAGGAGATTACAGTTCTCAGTTAG
AACCTTTAACTGCTGGTAAAACTTCAACTAATACGGGATTAAATTTAGAGGATGATAATATGCCTCTCGTACCCGAAGGA
GAAGAAGATTTATTTTTTGCCCCCGATGAGTTAGATGATATTCCCGACATTGATGCTGATGAGTTGCCAGTTTCGAGCAT
TTTTACAAAGGATAATAAACCAGAGCAGATATTTCCCAATGTTATAGAAACAGATGAGAATGTTTTTGATAGTGATTTTG
ATAATGAAATTACGGGGAGTTTTTCCTTTGATACAGATAAAATTAATTTAGATTTGGAAGAAGATATAAGTGTTTCTTCT
TCTTTAGGAGATATTTCTGGCATATCCTCGTCTATTGCTATTAATCCAGAAGTAGAAGTTCCCCAAGGAAAACTTGCCAA
ATATTATAATTTTTCCCTATTCACTAAACAATTAGTACATGGTGGTGTTACAGGAGTTGTTACTTTTGTGATTGTGTTAA
TGGTAAGTTTGTTTCAAGGGGGAGGTAAGAATATAGAAAATACAAGTGTGACGACTACTGAATCTGGAGGAGAAACGACC
GAACAAACTCAAGAAACAAGGGAAACTCAAGAAATACCATTGCCTTTTTCTCGGACATTGTTGTTAAGTTTAATCGCTGG
TATTAGTGGTGGAGCTTCTACCATTGCAATGGGTTATTTGATGACTAATCACATTAAACGCTATACCAATGACTTGCAAA
ATCACTTTGAATCCATTTATCAGGGTGATTATGAGATAAAAGCAACGGTTTATTCTCAAGATGAATTTGGTACTTTAGCT
GCTGGTTTTAATCAGATGACAAAAATGATTTATACCACTACCACAGAGGCGAGAAAGAGGGCTGAAGAGACGGAGAGAGC
AAGGGAGGATTTACAAAGACAGGTTATTCGTCTTCTTGATGATGTGGAAGGAGCTTCTAGGGGTGATTTAACGGTACAAG
CTGAGGTAACAGCAGACGTATTAGGGGCGGTAGCGGATGCTTTCAACGTGACTATTACTAACTTGCGGAAAATCGTTAAA
CAGGTACAACAGGCGGCGGTACAGGTTAACAAAGCAAGTACTGATAGTGAGGTGTTTGCTCGTAATCAATCGAGTGATGC
GTTGCGGATGGCGGAAGAATTGGCCGTTACGTTAAATTCTGTTCAGATGATGACAGATTCAATTCAGAGGGTGGCAGAAA
ACGCCAGAGAAGCGGAAGAGGTGGCCCGTTCCTCTAGTGTTACGGCTTTAAAGGGTGGTGATGCGGTAGAAAGAACTGTT
GCTGGTATTTTGCAGATTAGGGAAACAGTGTCAGAAACAACCCGAAAGGTAAAAAGATTGGCAGAGGCATCCCAACAAAT
TTCAACGATTGTGGCTGTTATTTCTCAGATTTCTTCTCGTACCAACCTATTAGCTTTAAATGCTTCTATTCAGGCCGCAA
GGGCAGGAGAGGCGGGGAGAGGATTTGCGATCGTTGCTGATGAGGTACGACAGTTAGCAGATAGATCAGCAAAATCCTTG
CAGGAAATTGAACAAATTGTATTACAAATTCAAACAGAAACTGGTTCAGTTATGACGGCGATGGAAGAGGGTATTCAACA
GGTAAGAGATGTAACCGAGAGGTCTGAACAGGCAAAACGGGCATTGGAAGATATTATTCAAGTGTCCAATCGTATTGATG
CCTTGGTGCGATCGATTACAGCAGATACTGATGAGCAGAGAGAAAATTCCCGAGGAGTAGCAAAAGTAATGCAGGCGGTT
GAATTGACAGCTCAGGCAACTTCTCAAGAATCTCAGAGAGTAGCTGGTTCTTTGCAAAATTTGGTGGGCATTGCCAAAGA
TTTAATTTCCTCTGTGGAACGTTTTAGGGTTGATGATTAG

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(700-881)

HAMP domain (HAMP)

(521-570)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

47.564

100

0.489