Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV30_RS05215 Genome accession   NZ_AP025460
Coordinates   1126639..1128027 (+) Length   462 a.a.
NCBI ID   WP_065677939.1    Uniprot ID   -
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121639..1133027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS05195 rsxB 1122037..1122630 (-) 594 WP_065677937.1 electron transport complex subunit RsxB -
  OCV30_RS05200 rsxA 1122633..1123211 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  OCV30_RS05210 uvrB 1124307..1126337 (+) 2031 WP_065677938.1 excinuclease ABC subunit UvrB -
  OCV30_RS05215 luxO 1126639..1128027 (+) 1389 WP_065677939.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV30_RS05220 luxU 1128052..1128396 (+) 345 WP_065677940.1 quorum-sensing phosphorelay protein LuxU -
  OCV30_RS05225 - 1128492..1129379 (-) 888 WP_065677941.1 YvcK family protein -
  OCV30_RS05230 moaA 1129715..1130704 (+) 990 WP_029223023.1 GTP 3',8-cyclase MoaA -
  OCV30_RS05235 moaB 1130795..1131307 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  OCV30_RS05240 moaC 1131320..1131799 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV30_RS05245 moaD 1131796..1132041 (+) 246 WP_065677942.1 molybdopterin synthase sulfur carrier subunit -
  OCV30_RS05250 moaE 1132044..1132517 (+) 474 WP_065677943.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51763.29 Da        Isoelectric Point: 6.1957

>NTDB_id=91636 OCV30_RS05215 WP_065677939.1 1126639..1128027(+) (luxO) [Vibrio atlanticus strain CECT 7223]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAEEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91636 OCV30_RS05215 WP_065677939.1 1126639..1128027(+) (luxO) [Vibrio atlanticus strain CECT 7223]
ATGCAATCAAAAACGTTAGATAACAAATCGAAGTATTTGTTAATGGTAGAAGATACCGCGTCGGTAGCAGCGTTATATCG
ATCGTATCTTACACCGCTCGAAATTGATATTAACATTGTTGGTACTGGCCGCGATGCAATCGAGAGTTTGAACCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGCCTGCCCGATATGACGGGTATGGATGTACTGTTTGCTGTAAAACAAAAATAT
CCGGAAGTTCCCGTTATTTTCATGACTGCTCACGGCTCTATTGATACCGCAGTAGAAGCCATGCGACATGGCTCCCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCCACTAAACTTAAAA
ATAGCTCGGAACATCCAGGAAATCAGAACTATCAAGGCTTTATTGGCAGTAGTCAAACCATGCAGCAGGTTTACCGAACG
ATCGATTCTGCCGCATCGAGCAAAGCCAGTATTTTCATCACAGGTGAAAGTGGTACCGGTAAAGAGGTATGTGCTGAAGC
CATTCACGCTGCGAGTAAGCGTGGCGATAAGCCATTTATCGCAATTAACTGTGCAGCGATTCCTAAAGATTTGATTGAGA
GTGAATTGTTTGGTCACGTTAAAGGGGCCTTTACTGGAGCGGCAACGGATCGACAAGGCGCAGCTGAACTTGCAGATGGT
GGAACCCTGTTCCTCGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACTAAGCTACTCCGCTTCATTCAAACTGGTAC
CTTTCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTCGTATGTGCAACGAACCGCGACCCTTGGAAGG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTGATTCCACTGCATTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTCATCGAAATTGCATATTCATTGCTGGGTTATATGTCTGTCGAAGAAGGCAAGGCGTTCGTACGTTT
TGCTGAAGAAGTACTCGATCGCTTTAATCAATATGAGTGGCCGGGGAACGTTCGTCAGTTACAAAATGTGTTGCGAAATG
TAGTGGTACTGAATAATGGTAAAGAGATTACTCTCAATATGCTTCCACCGCCATTGAACCAACCAATTGAAAACAGTCTC
CGTTTAAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATCAAAGCGTGTGACGGCAACATTCCCCGTGCGGCAGGTTTCTTGGATGTCAGTCCATCGACGATATACCGAA
AATTGCAAACATGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment