Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU36_RS11030 Genome accession   NZ_AP025458
Coordinates   2480548..2481153 (+) Length   201 a.a.
NCBI ID   WP_261838057.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2475548..2486153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS11010 - 2475826..2476743 (-) 918 WP_261838054.1 ABC transporter ATP-binding protein -
  OCU36_RS11015 - 2477041..2478672 (-) 1632 WP_261839726.1 SulP family inorganic anion transporter -
  OCU36_RS11020 can 2478959..2479618 (+) 660 WP_261838055.1 carbonate dehydratase -
  OCU36_RS11025 hpt 2479692..2480222 (-) 531 WP_261838056.1 hypoxanthine phosphoribosyltransferase -
  OCU36_RS11030 opaR 2480548..2481153 (+) 606 WP_261838057.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU36_RS11035 lpdA 2482129..2483556 (-) 1428 WP_261838058.1 dihydrolipoyl dehydrogenase -
  OCU36_RS11040 aceF 2483798..2485693 (-) 1896 WP_261838059.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23196.55 Da        Isoelectric Point: 7.1485

>NTDB_id=91603 OCU36_RS11030 WP_261838057.1 2480548..2481153(+) (opaR) [Vibrio artabrorum strain CECT 7226]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DTIDLDVHAKENLHNITNEMVSLVAKNCHWLNVWFEWSTSTRDEVWPLFVTTNRTNQMLVQNMFSQAIERGEVCNKHAPK
HLANLFHGICYSLFIQAKRAETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91603 OCU36_RS11030 WP_261838057.1 2480548..2481153(+) (opaR) [Vibrio artabrorum strain CECT 7226]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTCGA
GGTCTTCTCTCGTCGTGGCATTGGACGTGGCGGTCATGCAGACATCGCTGACATTGCCCAAGTTTCCGTTGCAACCGTGT
TTAACTACTTTCCAACCCGTGAAGATCTGGTTGATGAGGTGCTGAATCACGTAGTCCGCCAATTCTCCAATTTTCTCTCA
GACACGATTGATCTCGATGTTCACGCAAAAGAGAACTTACACAATATCACGAACGAAATGGTGAGCTTAGTCGCTAAAAA
TTGCCATTGGTTGAATGTTTGGTTCGAATGGAGCACATCGACTCGTGATGAAGTCTGGCCTCTATTTGTAACAACAAATC
GTACAAATCAAATGTTAGTGCAAAATATGTTCAGTCAAGCGATTGAACGCGGTGAAGTCTGCAACAAGCATGCTCCTAAA
CACCTAGCAAACCTATTCCATGGCATTTGTTACTCGCTATTTATCCAAGCGAAACGTGCAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.5

99.502

0.801
  hapR Vibrio cholerae C6706

72.362

99.005

0.716
  hapR Vibrio cholerae strain A1552

72.362

99.005

0.716

Multiple sequence alignment