Detailed information NTG0091597

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU36_RS07485
• Genome accession: NZ_AP025458
• Coordinates: 1663970..1665394 (+)
• Length: 474 a.a.
• NCBI ID: WP_261837433.1
• Uniprot ID: -
• Organism: Vibrio artabrorum strain CECT 7226
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1658970..1670394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU36_RS07465	cobT	1659005..1660033 (-)	1029	WP_261837429.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
OCU36_RS07470	-	1660431..1661126 (+)	696	WP_261837430.1	NAD(P)H-binding protein	-
OCU36_RS07475	-	1661312..1662685 (+)	1374	WP_261837431.1	L-cystine transporter	-
OCU36_RS07480	-	1662845..1663366 (-)	522	WP_261837432.1	DUF2058 domain-containing protein	-
OCU36_RS07485	sbcB	1663970..1665394 (+)	1425	WP_261837433.1	exodeoxyribonuclease I	Machinery gene
OCU36_RS07490	-	1665420..1665791 (+)	372	WP_261837434.1	CidA/LrgA family protein	-
OCU36_RS07495	-	1665794..1666471 (+)	678	WP_261837435.1	CidB/LrgB family autolysis modulator	-
OCU36_RS07500	cdd	1666770..1667657 (+)	888	WP_261837436.1	cytidine deaminase	-
OCU36_RS07505	purT	1667825..1669000 (+)	1176	WP_261837437.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU36_RS07510	-	1669110..1669763 (-)	654	WP_261837438.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54750.04 Da
• Isoelectric Point: 4.9643

>NTDB_id=91597 OCU36_RS07485 WP_261837433.1 1663970..1665394(+) (sbcB) [Vibrio artabrorum strain CECT 7226]
MSLDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKALSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEDGYP
SFKLEDLSKANDIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCHY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELSENELPVPIKLVHLNKCPILAPAKTLTAENAA
TIGIDRQQCLNNLALLREHPEIREKLIGLYSQERVYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLSALDITFGDE
RIKPLLFRYRARHFPWTLDEQEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVENLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=91597 OCU36_RS07485 WP_261837433.1 1663970..1665394(+) (sbcB) [Vibrio artabrorum strain CECT 7226]
ATGAGTTTAGACAATCAGCCAACCTACTTCTTTTTCGACTACGAAACATGGGGCGTAAGCCCAGCGAAAGATCGCCCAAG
TCAGTTCGCAGGTGTTCGTACCGATCAAGATTTTAATATTATCGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTATCTGCCTGCACCTGAAGCCGCATTAATTACTCGCATCACACCACAAAAAGCCCTGTCCCAAGGCTTACCTGAACCT
GAATTCATCGCCAAAATTCATGCTGAACTTGCTAAGCCCAATACCACCAGCCTTGGCTACAATAGCATTCGTTTCGATGA
CGAAGTCACACGATATACCTGTTATCGTAATTTTATCGACCCGTACGCATGGAGCTGGCAGAACGGTAACTCTCGTTGGG
ATCTACTGGACGTGATGCGCGCCGTCCACGCACTTCGCCCTGAAGGCATTGTCTGGCCAGAGAACGAAGACGGTTACCCA
AGTTTCAAACTGGAAGACCTATCAAAGGCCAATGACATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACTATCGAGTTAGCGAAAAAGTTGAAAGCGGCACAGCCGAAAATGTTTGACTACCTATACAACATGCGCCACAAGCGTA
AGCTGAATGAGTTAGTCGACATTGTAAACATGACGCCTCTAATGCACGTTTCAGGCATGTTCGGTCGTGATTGCCACTAC
ACGAGCTGGGTGGTGCCTATGGCGTGGCACCCAACCAATCAAAATGCGGTTATCGTGGTTGACTTGGCTAAAGACCCTAG
CCCATTGCTTGAGCTTGATTCCGATGCCCTGCGTGAAAGGCTCTATACAAAGCGCAGTGAGCTATCAGAAAACGAGCTTC
CAGTTCCGATCAAACTTGTACACTTGAACAAGTGTCCAATTCTTGCACCAGCAAAAACCCTGACGGCTGAAAATGCCGCA
ACTATCGGTATTGATCGACAACAGTGTCTCAATAACCTAGCACTATTACGTGAACACCCTGAAATTCGCGAAAAGCTGAT
CGGTTTGTATTCACAAGAACGTGTATACGAGAAAAGTGACGACGTCGACACCCATCTGTATGACGGCTTCTTTTCACCCG
CCGATAAAACCGCAATGAACATCATTCGTGAAACCGACCCAAATAACTTATCAGCGTTAGACATCACTTTTGGCGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCTCGACACTTCCCATGGACACTTGATGAGCAGGAGCAATTGAAGTGGGC
AAACCATTGTCGTGAGTTTTACGAAAGTCGCTTGGAAGAGTACATGTTAAACCTAGAGAATCTCGCACACGAACATGAGA
GCGACGAAAAAAAGATGGCGATCTTGAAGGCGGTTTATCAATACGTAGAAAACTTAGCCAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.11	99.789	0.759