Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABXV02_RS05150 Genome accession   NZ_CP159912
Coordinates   981179..981814 (+) Length   211 a.a.
NCBI ID   WP_003243201.1    Uniprot ID   O32197
Organism   Bacillus subtilis strain PY79     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 976179..986814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS05125 liaI 977306..977686 (+) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -
  ABXV02_RS05130 liaH 977713..978390 (+) 678 WP_003243047.1 stress responsive protein LiaH -
  ABXV02_RS05135 liaG 978491..979363 (+) 873 WP_003244420.1 DUF4097 domain-containing protein -
  ABXV02_RS05140 liaF 979397..980122 (+) 726 WP_003242605.1 LiaRS two-component regulatory system accessory protein LiaF -
  ABXV02_RS05145 liaS 980119..981201 (+) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  ABXV02_RS05150 vraR 981179..981814 (+) 636 WP_003243201.1 two-component system response regulator LiaR Regulator
  ABXV02_RS05155 gerAC 981822..982943 (-) 1122 WP_009968146.1 spore germination receptor protein GerAC -
  ABXV02_RS05160 gerAB 982940..984037 (-) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  ABXV02_RS05165 gerAA 984006..985454 (-) 1449 WP_009969097.1 spore germination receptor protein GerAA -
  ABXV02_RS05170 yvzF 985572..985757 (+) 186 WP_003244599.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23124.76 Da        Isoelectric Point: 4.9049

>NTDB_id=915940 ABXV02_RS05150 WP_003243201.1 981179..981814(+) (vraR) [Bacillus subtilis strain PY79]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=915940 ABXV02_RS05150 WP_003243201.1 981179..981814(+) (vraR) [Bacillus subtilis strain PY79]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408