Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8P24_RS00040 Genome accession   NZ_CP141076
Coordinates   9642..10208 (+) Length   188 a.a.
NCBI ID   WP_048942121.1    Uniprot ID   -
Organism   Enterococcus faecalis strain HRH55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4642..15208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P24_RS00030 (U8P24_00030) gyrA 6619..9120 (+) 2502 WP_002361457.1 DNA gyrase subunit A -
  U8P24_RS00035 (U8P24_00035) rpsF 9295..9597 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  U8P24_RS00040 (U8P24_00040) ssb 9642..10208 (+) 567 WP_048942121.1 single-stranded DNA-binding protein Machinery gene
  U8P24_RS00045 (U8P24_00045) rpsR 10234..10473 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  U8P24_RS00050 (U8P24_00050) - 10630..12654 (+) 2025 WP_002363542.1 DHH family phosphoesterase -
  U8P24_RS00055 (U8P24_00055) rplI 12660..13112 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  U8P24_RS00060 (U8P24_00060) dnaB 13385..14752 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20540.16 Da        Isoelectric Point: 4.6010

>NTDB_id=915900 U8P24_RS00040 WP_048942121.1 9642..10208(+) (ssb) [Enterococcus faecalis strain HRH55]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSLNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=915900 U8P24_RS00040 WP_048942121.1 9642..10208(+) (ssb) [Enterococcus faecalis strain HRH55]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCGAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTGAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.548