Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6442_RS32565 Genome accession   NZ_AP025343
Coordinates   7258575..7259054 (+) Length   159 a.a.
NCBI ID   WP_194230901.1    Uniprot ID   -
Organism   Paenibacillus azoreducens strain J34TS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7253575..7264054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6442_RS32525 (PAJ34TS1_65450) - 7254554..7255054 (+) 501 WP_212980465.1 DUF4446 family protein -
  L6442_RS32530 (PAJ34TS1_65460) yyaC 7255029..7255634 (-) 606 WP_194230895.1 spore protease YyaC -
  L6442_RS32535 (PAJ34TS1_65470) - 7255744..7255989 (+) 246 WP_212980466.1 DUF3343 domain-containing protein -
  L6442_RS32540 (PAJ34TS1_65480) - 7255999..7256913 (+) 915 WP_212980467.1 mechanosensitive ion channel family protein -
  L6442_RS32545 (PAJ34TS1_65490) - 7256931..7257149 (+) 219 WP_212980468.1 DUF951 domain-containing protein -
  L6442_RS32555 (PAJ34TS1_65500) - 7257836..7258030 (-) 195 WP_194230899.1 YjzC family protein -
  L6442_RS32560 (PAJ34TS1_65510) rpsF 7258237..7258521 (+) 285 WP_194230900.1 30S ribosomal protein S6 -
  L6442_RS32565 (PAJ34TS1_65520) ssbA 7258575..7259054 (+) 480 WP_194230901.1 single-stranded DNA-binding protein Machinery gene
  L6442_RS32570 (PAJ34TS1_65530) rpsR 7259077..7259349 (+) 273 WP_036710728.1 30S ribosomal protein S18 -
  L6442_RS32575 (PAJ34TS1_65540) - 7260036..7261871 (+) 1836 WP_212980469.1 sensor histidine kinase -
  L6442_RS32580 (PAJ34TS1_65550) - 7261864..7263387 (+) 1524 WP_212980470.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17803.57 Da        Isoelectric Point: 4.7158

>NTDB_id=91535 L6442_RS32565 WP_194230901.1 7258575..7259054(+) (ssbA) [Paenibacillus azoreducens strain J34TS1]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGRRVYVTEVIADNVRFLESNREGGSGGGQGPREDSSFGGGNRENNNYSRNNSNQDPFFDDGKPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=91535 L6442_RS32565 WP_194230901.1 7258575..7259054(+) (ssbA) [Paenibacillus azoreducens strain J34TS1]
TTGTTGAACCGTGTAATTTTAATTGGCCGTTTGACCAAGGATCCTGAGCTTCGCTACACGCCCGCAGGGGTTGCGGTAAC
GCAGTTCACGCTGGCTGTAGACAGACCGTTTACGTCGCAAGGCGGAGAGCGGGAAGCGGATTTTATTCCAGTGGTGACTT
GGAGACAGCTTGCTGAGACCTGTGCAAACTATTTGCGCAAAGGCCGTTTGACGGCTGTTGAAGGTCGCATCCAGGTGCGG
AATTACGAAAATAACGAAGGTAGACGCGTATATGTCACCGAAGTCATTGCCGATAACGTACGTTTCCTGGAATCGAACCG
CGAAGGCGGCAGCGGCGGTGGTCAAGGACCGCGTGAGGACTCCTCTTTTGGAGGCGGAAACCGCGAAAATAACAATTACT
CCCGGAACAATTCCAATCAAGATCCTTTTTTCGATGACGGAAAACCGATAGATATTTCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.528
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

65.409

0.384

Multiple sequence alignment