Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U6038_RS14205 Genome accession   NZ_CP140715
Coordinates   2937601..2938248 (+) Length   215 a.a.
NCBI ID   WP_333653892.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2932601..2943248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14180 (U6038_14180) - 2932659..2933039 (+) 381 WP_333653879.1 MAE_28990/MAE_18760 family HEPN-like nuclease -
  U6038_RS14185 (U6038_14185) - 2933067..2933999 (+) 933 WP_333653881.1 IS5 family transposase -
  U6038_RS14190 (U6038_14190) - 2934022..2934522 (+) 501 WP_333653883.1 hypothetical protein -
  U6038_RS14195 (U6038_14195) - 2934720..2935535 (-) 816 WP_333653886.1 NAD-dependent epimerase/dehydratase family protein -
  U6038_RS14200 (U6038_14200) recG 2935569..2937614 (+) 2046 WP_333653889.1 ATP-dependent DNA helicase RecG -
  U6038_RS14205 (U6038_14205) comF 2937601..2938248 (+) 648 WP_333653892.1 ComF family protein Machinery gene
  U6038_RS14210 (U6038_14210) - 2938249..2938653 (-) 405 WP_010327611.1 NUDIX hydrolase -
  U6038_RS14215 (U6038_14215) - 2938650..2939249 (-) 600 WP_010327612.1 TIGR00730 family Rossman fold protein -
  U6038_RS14220 (U6038_14220) - 2939402..2940415 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  U6038_RS14225 (U6038_14225) - 2940497..2940784 (-) 288 WP_004691363.1 STAS domain-containing protein -
  U6038_RS14230 (U6038_14230) - 2940796..2941431 (-) 636 WP_125273539.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  U6038_RS14235 (U6038_14235) - 2941452..2942126 (-) 675 WP_005401297.1 outer membrane lipid asymmetry maintenance protein MlaD -
  U6038_RS14240 (U6038_14240) mlaE 2942126..2942905 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24896.15 Da        Isoelectric Point: 9.1906

>NTDB_id=915132 U6038_RS14205 WP_333653892.1 2937601..2938248(+) (comF) [Acinetobacter johnsonii strain FAHZZU3110hy]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGIIQQIRLPKIQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDKIHQQ
FKIDPQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=915132 U6038_RS14205 WP_333653892.1 2937601..2938248(+) (comF) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTATTCAGCAAATTCGCTTACCTAAAATACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATAAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGCCAGTACGTAAAACTCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCAGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.186

90.233

0.507
  comF Acinetobacter baumannii D1279779

56.186

90.233

0.507