Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U6038_RS06715 Genome accession   NZ_CP140715
Coordinates   1416487..1416933 (+) Length   148 a.a.
NCBI ID   WP_333656313.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411487..1421933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS06685 (U6038_06685) kdsB 1412335..1413096 (+) 762 WP_205666743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U6038_RS06690 (U6038_06690) - 1413116..1414099 (+) 984 WP_205666742.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  U6038_RS06695 (U6038_06695) - 1414114..1414455 (+) 342 WP_333656308.1 PilZ domain-containing protein -
  U6038_RS06700 (U6038_06700) - 1414482..1415255 (+) 774 WP_205666741.1 TatD family hydrolase -
  U6038_RS06705 (U6038_06705) - 1415301..1415915 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  U6038_RS06710 (U6038_06710) - 1415928..1416497 (+) 570 WP_205666740.1 type II secretion system protein -
  U6038_RS06715 (U6038_06715) xcpV 1416487..1416933 (+) 447 WP_333656313.1 type II secretion system minor pseudopilin GspI Machinery gene
  U6038_RS06720 (U6038_06720) xcpW 1416930..1417550 (+) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U6038_RS06725 (U6038_06725) gspK 1417629..1418579 (+) 951 WP_333656316.1 type II secretion system minor pseudopilin GspK -
  U6038_RS06730 (U6038_06730) - 1418702..1419298 (+) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  U6038_RS06735 (U6038_06735) ung 1419340..1420053 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  U6038_RS06740 (U6038_06740) - 1420050..1420772 (+) 723 Protein_1292 enoyl-CoA hydratase/isomerase family protein -
  U6038_RS06745 (U6038_06745) - 1420791..1421492 (-) 702 WP_004841207.1 IS1 family transposase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16364.82 Da        Isoelectric Point: 9.5613

>NTDB_id=915121 U6038_RS06715 WP_333656313.1 1416487..1416933(+) (xcpV) [Acinetobacter johnsonii strain FAHZZU3110hy]
MRAKDLKKSLPACAWVKYYFINPCSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEIN
RDWLQGTASKQITQQGETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLFFFNHRDGSQP

Nucleotide


Download         Length: 447 bp        

>NTDB_id=915121 U6038_RS06715 WP_333656313.1 1416487..1416933(+) (xcpV) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCGAGCTAAAGATTTAAAGAAGAGTCTGCCGGCTTGCGCTTGGGTGAAATATTATTTCATTAATCCTTGCTCAGGATT
TACATTGCTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGCAGCGGTCGCTTTAACCAAAGTGGGTATGCAATATA
CTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTGTTGCCTTGAATGAAATCTCTATGATGGAAATCAAT
CGGGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAAGGTGAAACTTGGCAAATTGATAAATCAGCGCAGGC
AACGATTAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTTGGTGAATACTGAAACTGGAAAAGTAGATTCGGGTG
TTACGAGTTTATTTTTTTTTAACCATCGTGATGGAAGCCAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(23-46)

Type II secretion system (T2SS), protein I (T2SSI)

(63-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

74.359

79.054

0.588