Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   U6038_RS01165 Genome accession   NZ_CP140715
Coordinates   239161..240729 (-) Length   522 a.a.
NCBI ID   WP_333654786.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 234161..245729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS01150 (U6038_01150) gpmI 234978..236525 (+) 1548 WP_279735365.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  U6038_RS01155 (U6038_01155) - 236544..237719 (+) 1176 WP_333654781.1 S41 family peptidase -
  U6038_RS01160 (U6038_01160) pilR 237724..239088 (-) 1365 WP_417884541.1 sigma-54-dependent transcriptional regulator Regulator
  U6038_RS01165 (U6038_01165) pilS 239161..240729 (-) 1569 WP_333654786.1 sensor histidine kinase Regulator
  U6038_RS01170 (U6038_01170) - 240751..241386 (-) 636 WP_004692836.1 response regulator -
  U6038_RS01175 (U6038_01175) - 241602..242657 (+) 1056 WP_125273423.1 serine hydrolase -
  U6038_RS01180 (U6038_01180) thrC 242744..243883 (-) 1140 WP_004692833.1 threonine synthase -
  U6038_RS01185 (U6038_01185) - 243949..245253 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59620.07 Da        Isoelectric Point: 6.3035

>NTDB_id=915105 U6038_RS01165 WP_333654786.1 239161..240729(-) (pilS) [Acinetobacter johnsonii strain FAHZZU3110hy]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRISLQL
TLLFIVDVSSLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLINPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLLVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQANDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDAAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=915105 U6038_RS01165 WP_333654786.1 239161..240729(-) (pilS) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
TTGTTGTTTGTTGTTGGTTTATCTGCTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTGTTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATATCACTTCAGCTC
ACCTTGTTGTTTATTGTCGATGTCAGTAGTCTCAGTTTACTCACTTTCGCAACCGATGGTCCGAACTTACAGTTAAGTTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACATTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGCGCCGTGCTC
GCCTTTTTGTTCTTTGTAGTTTATGGGTCTGGACAAATTGCAGTCCGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAATCCCAAGAACTAGACCAACTACAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCATATGGTACTCATTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCAATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTCCTCAAATTCGACCAGCTGAAGAATGGAGAAAAATTCCAATT
TACATCTCAACTGAGCCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACTTTATTAG
TCCTGCAAGATGCACAAAAAATTAATCAACGGGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCACTGGCAGCCATCACTCAAGCCAATGAGTTGATGCAAGCCAATGATCCACAACAAGAACT
GTTGCAGAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGCCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGAGCATATTCAAATTCGTGTCTATAGCTATAAAAATCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.501

99.808

0.594