Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   TQH59_RS14740 Genome accession   NZ_CP140708
Coordinates   2950007..2950654 (+) Length   215 a.a.
NCBI ID   WP_333640578.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2945007..2955654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS14725 (TQH59_14725) - 2946700..2946933 (-) 234 WP_120368508.1 DUF6500 family protein -
  TQH59_RS14730 (TQH59_14730) - 2947126..2947941 (-) 816 WP_333640576.1 NAD-dependent epimerase/dehydratase family protein -
  TQH59_RS14735 (TQH59_14735) recG 2947975..2950020 (+) 2046 WP_333640577.1 ATP-dependent DNA helicase RecG -
  TQH59_RS14740 (TQH59_14740) comF 2950007..2950654 (+) 648 WP_333640578.1 ComF family protein Machinery gene
  TQH59_RS14745 (TQH59_14745) - 2950655..2951059 (-) 405 WP_333640579.1 NUDIX domain-containing protein -
  TQH59_RS14750 (TQH59_14750) - 2951056..2951655 (-) 600 WP_004977937.1 TIGR00730 family Rossman fold protein -
  TQH59_RS14755 (TQH59_14755) - 2951808..2952821 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  TQH59_RS14760 (TQH59_14760) - 2952903..2953190 (-) 288 WP_291389584.1 STAS domain-containing protein -
  TQH59_RS14765 (TQH59_14765) - 2953202..2953837 (-) 636 WP_004691364.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  TQH59_RS14770 (TQH59_14770) - 2953858..2954532 (-) 675 WP_279744772.1 outer membrane lipid asymmetry maintenance protein MlaD -
  TQH59_RS14775 (TQH59_14775) mlaE 2954532..2955311 (-) 780 WP_291389580.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24881.09 Da        Isoelectric Point: 8.9595

>NTDB_id=915090 TQH59_RS14740 WP_333640578.1 2950007..2950654(+) (comF) [Acinetobacter johnsonii strain FAHZZU3567hy]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIQQQ
FKIDPQQRQYVKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=915090 TQH59_RS14740 WP_333640578.1 2950007..2950654(+) (comF) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTAGACTGCTGGCAACAACTTCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCATCTGATTCAGCAGTTCAAATATGAACAGCAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCTATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCAAAGCAGTTAAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCAGCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGTAAAACTTTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
TAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.45

98.14

0.544
  comF Acinetobacter baumannii strain A118

58.247

90.233

0.526