Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   TQH59_RS08830 Genome accession   NZ_CP140708
Coordinates   1772984..1773385 (-) Length   133 a.a.
NCBI ID   WP_125281145.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767984..1778385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS08800 (TQH59_08800) tadA 1768240..1768740 (-) 501 WP_333640059.1 tRNA adenosine(34) deaminase TadA -
  TQH59_RS08805 (TQH59_08805) - 1768746..1769867 (-) 1122 WP_333640060.1 enoyl-CoA hydratase/isomerase family protein -
  TQH59_RS08810 (TQH59_08810) ung 1769864..1770577 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  TQH59_RS08815 (TQH59_08815) - 1770619..1771215 (-) 597 WP_262469885.1 6-pyruvoyl trahydropterin synthase family protein -
  TQH59_RS08820 (TQH59_08820) gspK 1771338..1772288 (-) 951 WP_262469886.1 type II secretion system minor pseudopilin GspK -
  TQH59_RS08825 (TQH59_08825) xcpW 1772367..1772987 (-) 621 WP_195728025.1 type II secretion system minor pseudopilin GspJ Machinery gene
  TQH59_RS08830 (TQH59_08830) xcpV 1772984..1773385 (-) 402 WP_125281145.1 type II secretion system minor pseudopilin GspI Machinery gene
  TQH59_RS08835 (TQH59_08835) - 1773420..1773989 (-) 570 WP_125281125.1 type II secretion system protein -
  TQH59_RS08840 (TQH59_08840) - 1774002..1774616 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  TQH59_RS08845 (TQH59_08845) - 1774662..1775435 (-) 774 WP_125281124.1 TatD family hydrolase -
  TQH59_RS08850 (TQH59_08850) - 1775462..1775803 (-) 342 WP_125281123.1 PilZ domain-containing protein -
  TQH59_RS08855 (TQH59_08855) - 1775818..1776801 (-) 984 WP_125281122.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  TQH59_RS08860 (TQH59_08860) kdsB 1776821..1777582 (-) 762 WP_333640067.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14763.91 Da        Isoelectric Point: 10.3760

>NTDB_id=915080 TQH59_RS08830 WP_125281145.1 1772984..1773385(-) (xcpV) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKRYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDRSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=915080 TQH59_RS08830 WP_125281145.1 1772984..1773385(-) (xcpV) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGAAACGTTATTTCATTAATCCTCGCTCAGGATTTACATTGTTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCTATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATAGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

72.131

91.729

0.662