NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	TQH59_RS08825	Genome accession	NZ_CP140708
Coordinates	1772367..1772987 (-)	Length	206 a.a.
NCBI ID	WP_195728025.1	Uniprot ID	A0AA42U7Y4
Organism	Acinetobacter johnsonii strain FAHZZU3567hy
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1767367..1777987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TQH59_RS08795 (TQH59_08795)	-	1767733..1768164 (-)	432	WP_004696860.1	SRPBCC family protein	-
TQH59_RS08800 (TQH59_08800)	tadA	1768240..1768740 (-)	501	WP_333640059.1	tRNA adenosine(34) deaminase TadA	-
TQH59_RS08805 (TQH59_08805)	-	1768746..1769867 (-)	1122	WP_333640060.1	enoyl-CoA hydratase/isomerase family protein	-
TQH59_RS08810 (TQH59_08810)	ung	1769864..1770577 (-)	714	WP_004696856.1	uracil-DNA glycosylase	-
TQH59_RS08815 (TQH59_08815)	-	1770619..1771215 (-)	597	WP_262469885.1	6-pyruvoyl trahydropterin synthase family protein	-
TQH59_RS08820 (TQH59_08820)	gspK	1771338..1772288 (-)	951	WP_262469886.1	type II secretion system minor pseudopilin GspK	-
TQH59_RS08825 (TQH59_08825)	xcpW	1772367..1772987 (-)	621	WP_195728025.1	type II secretion system minor pseudopilin GspJ	Machinery gene
TQH59_RS08830 (TQH59_08830)	xcpV	1772984..1773385 (-)	402	WP_125281145.1	type II secretion system minor pseudopilin GspI	Machinery gene
TQH59_RS08835 (TQH59_08835)	-	1773420..1773989 (-)	570	WP_125281125.1	type II secretion system protein	-
TQH59_RS08840 (TQH59_08840)	-	1774002..1774616 (-)	615	WP_114836892.1	TetR/AcrR family transcriptional regulator	-
TQH59_RS08845 (TQH59_08845)	-	1774662..1775435 (-)	774	WP_125281124.1	TatD family hydrolase	-
TQH59_RS08850 (TQH59_08850)	-	1775462..1775803 (-)	342	WP_125281123.1	PilZ domain-containing protein	-
TQH59_RS08855 (TQH59_08855)	-	1775818..1776801 (-)	984	WP_125281122.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
TQH59_RS08860 (TQH59_08860)	kdsB	1776821..1777582 (-)	762	WP_333640067.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 206 a.a. Molecular weight: 23545.08 Da Isoelectric Point: 5.3491

                                >NTDB_id=915079 TQH59_RS08825 WP_195728025.1 1772367..1772987(-) (xcpW) [Acinetobacter johnsonii strain FAHZZU3567hy]

MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM

LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEIAQWP

EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

Download Length: 621 bp

                                >NTDB_id=915079 TQH59_RS08825 WP_195728025.1 1772367..1772987(-) (xcpW) [Acinetobacter johnsonii strain FAHZZU3567hy]

ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTTGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG

GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGTTACAAGAAGCAT

ATCAACAAGTGTTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG

TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT

TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACAGGTAATGATCAAC

CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCTAATGAAATAGCACAATGGCCT

GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGGTTAAAAATAAACCTCACTGTCAATGA

AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	58.706	97.573	0.573

Detailed information NTG0915079