Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   TQH59_RS01130 Genome accession   NZ_CP140708
Coordinates   230380..231948 (-) Length   522 a.a.
NCBI ID   WP_333641019.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 225380..236948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS01115 (TQH59_01115) gpmI 226197..227744 (+) 1548 WP_062033296.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  TQH59_RS01120 (TQH59_01120) - 227763..228938 (+) 1176 WP_333641016.1 S41 family peptidase -
  TQH59_RS01125 (TQH59_01125) pilR 228943..230307 (-) 1365 WP_417885515.1 sigma-54-dependent transcriptional regulator Regulator
  TQH59_RS01130 (TQH59_01130) pilS 230380..231948 (-) 1569 WP_333641019.1 sensor histidine kinase Regulator
  TQH59_RS01135 (TQH59_01135) - 231971..232606 (-) 636 WP_010325697.1 response regulator -
  TQH59_RS01140 (TQH59_01140) - 232822..233877 (+) 1056 WP_125280619.1 serine hydrolase -
  TQH59_RS01145 (TQH59_01145) thrC 233963..235102 (-) 1140 WP_058868731.1 threonine synthase -
  TQH59_RS01150 (TQH59_01150) - 235168..236472 (-) 1305 WP_010325700.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59428.87 Da        Isoelectric Point: 6.6478

>NTDB_id=915064 TQH59_RS01130 WP_333641019.1 230380..231948(-) (pilS) [Acinetobacter johnsonii strain FAHZZU3567hy]
MARHNSNIQLNQYRLGIWYASYRLFIGCCLLLVFLLTYAQLFSNYQYPALYRYVLIGFIFISAFQLLSLKNIRTHIPLQL
TLLFIVDVVSLSLLTFATDGPNLQLSLLFVITIFASSLLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQFLENINFYQSQELDQLQNINRYILEQTELGYLVLDENCHIVLSNPAACALLGISPIYANDK
YPLYKAQPDLFELLKFDQLKNGEKFQFKSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNGPQQELLHNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIIEDLPDVKDQ
IDYCISDAAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=915064 TQH59_RS01130 WP_333641019.1 230380..231948(-) (pilS) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGGCTCGACACAATAGCAATATTCAACTCAACCAATACCGCTTAGGCATTTGGTATGCGTCGTATCGACTGTTTATTGG
CTGTTGTTTACTGCTGGTATTTTTACTGACCTATGCGCAACTGTTTTCAAACTACCAGTATCCAGCACTATATCGCTATG
TACTGATTGGCTTTATTTTTATCAGTGCTTTTCAGCTCCTGAGCCTCAAGAATATACGGACACATATTCCGCTTCAGCTT
ACCTTACTGTTCATTGTCGATGTTGTCAGTCTCAGTTTACTCACCTTCGCCACAGATGGCCCTAACTTACAATTAAGTTT
ACTATTTGTGATCACGATTTTTGCCTCTTCCTTATTGGTGGATAAACAAAAAGCGCTCATCATTACTTTGATCGCAGTGA
TTACACTGGTTTATCAGCATTTTATTGGGACATTATTTTCAATTAGTTCACTCAACACCATTGGCAATAGTGCAGTGCTC
GCCTTTTTATTTTTTGTGGTGTATGGGTCAGGTCAAATTGCTGTTCGACGCTTCCAGTTCCTTGAAAACATAAATTTTTA
CCAATCTCAAGAATTAGATCAACTGCAAAATATTAACCGTTATATTCTTGAGCAAACCGAGCTGGGTTATTTGGTTCTCG
ATGAAAACTGCCATATTGTACTCAGTAACCCTGCAGCATGTGCACTCTTGGGTATTTCTCCGATTTATGCCAATGACAAA
TACCCTTTGTATAAAGCACAACCTGATTTATTCGAGCTACTCAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TAAATCACAGTTGAGTCGCTTTCAGATTCAAATCGAAATTCAAAAACTACAAGTCCCGAATCAAACGCTGACTTTGTTTG
TGCTGCAAGACGCACAAAAAATTAATCAACGCGTACAACAACTCAAACTGGCTGCACTGGGCCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCATTGGCAGCCATCACTCAAGCCAATGAACTGATGCAAGTCAATGGCCCACAACAAGAACT
ATTGCATAACATGATTGCCAAACAAGCTTCACGGATTGATAAAATTATTGGCGACACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACTTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCATTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTATTGCATTTCCGATGCAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGCTGAAGCTGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCTCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

61.24

98.851

0.605