Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABRY24_RS14235 Genome accession   NZ_CP159840
Coordinates   2491539..2491904 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA64     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486539..2496904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRY24_RS14205 (ABRY24_14205) pyrR 2487161..2487673 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABRY24_RS14210 (ABRY24_14210) ruvX 2487785..2488219 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ABRY24_RS14215 (ABRY24_14215) - 2488219..2488788 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  ABRY24_RS14220 (ABRY24_14220) - 2488837..2489730 (-) 894 WP_003162015.1 energy transducer TonB -
  ABRY24_RS14225 (ABRY24_14225) gshB 2489877..2490830 (-) 954 WP_003100943.1 glutathione synthase -
  ABRY24_RS14230 (ABRY24_14230) pilG 2491085..2491492 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ABRY24_RS14235 (ABRY24_14235) pilH 2491539..2491904 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ABRY24_RS14240 (ABRY24_14240) - 2491955..2492491 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ABRY24_RS14245 (ABRY24_14245) pilJ 2492576..2494624 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  ABRY24_RS14250 (ABRY24_14250) pilK 2494685..2495560 (+) 876 WP_031757002.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=915029 ABRY24_RS14235 WP_003084587.1 2491539..2491904(+) (pilH) [Pseudomonas aeruginosa strain PA64]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=915029 ABRY24_RS14235 WP_003084587.1 2491539..2491904(+) (pilH) [Pseudomonas aeruginosa strain PA64]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364