Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | L6430_RS20250 | Genome accession | NZ_AP025342 |
| Coordinates | 4035635..4035970 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain J41TS8 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4030635..4040970
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6430_RS20230 | gcvT | 4031065..4032159 (-) | 1095 | WP_020452162.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| L6430_RS20235 | - | 4032754..4034433 (+) | 1680 | WP_020452163.1 | DEAD/DEAH box helicase | - |
| L6430_RS20240 | - | 4034440..4035234 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| L6430_RS20245 | sinI | 4035425..4035601 (+) | 177 | WP_020452165.1 | anti-repressor SinI | Regulator |
| L6430_RS20250 | sinR | 4035635..4035970 (+) | 336 | WP_023855185.1 | transcriptional regulator SinR | Regulator |
| L6430_RS20255 | tasA | 4036075..4036869 (-) | 795 | WP_020452167.1 | biofilm matrix protein TasA | - |
| L6430_RS20260 | sipW | 4036942..4037526 (-) | 585 | WP_065644169.1 | signal peptidase I SipW | - |
| L6430_RS20265 | tapA | 4037523..4038251 (-) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| L6430_RS20270 | - | 4038529..4038849 (+) | 321 | WP_020452170.1 | YqzG/YhdC family protein | - |
| L6430_RS20275 | - | 4038879..4039061 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| L6430_RS20280 | comGG | 4039150..4039515 (-) | 366 | WP_020452172.1 | competence type IV pilus minor pilin ComGG | - |
| L6430_RS20285 | comGF | 4039527..4040015 (-) | 489 | WP_236613657.1 | competence type IV pilus minor pilin ComGF | - |
| L6430_RS20290 | comGE | 4039924..4040271 (-) | 348 | WP_020452174.1 | competence type IV pilus minor pilin ComGE | - |
| L6430_RS20295 | comGD | 4040255..4040692 (-) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=91491 L6430_RS20250 WP_023855185.1 4035635..4035970(+) (sinR) [Bacillus paralicheniformis strain J41TS8]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=91491 L6430_RS20250 WP_023855185.1 4035635..4035970(+) (sinR) [Bacillus paralicheniformis strain J41TS8]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |