Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L6430_RS20050 Genome accession   NZ_AP025342
Coordinates   3999542..4001272 (-) Length   576 a.a.
NCBI ID   WP_079289196.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3994542..4006272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS20025 - 3994846..3995151 (-) 306 WP_025811172.1 membrane lipoprotein lipid attachment site-containing protein -
  L6430_RS20030 - 3995651..3996220 (-) 570 WP_020452125.1 serine O-acetyltransferase -
  L6430_RS20035 - 3996350..3996646 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  L6430_RS20040 spo0A 3996988..3997788 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  L6430_RS20045 spoIVB 3998078..3999328 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  L6430_RS20050 recN 3999542..4001272 (-) 1731 WP_079289196.1 DNA repair protein RecN Machinery gene
  L6430_RS20055 ahrC 4001304..4001753 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  L6430_RS20060 - 4001917..4002762 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  L6430_RS20065 dxs 4002759..4004660 (-) 1902 WP_023855166.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L6430_RS20070 - 4004893..4005783 (-) 891 WP_020452132.1 polyprenyl synthetase family protein -
  L6430_RS20075 - 4005773..4006033 (-) 261 WP_020452133.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64595.44 Da        Isoelectric Point: 4.8010

>NTDB_id=91489 L6430_RS20050 WP_079289196.1 3999542..4001272(-) (recN) [Bacillus paralicheniformis strain J41TS8]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQQDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMRKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLTKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=91489 L6430_RS20050 WP_079289196.1 3999542..4001272(-) (recN) [Bacillus paralicheniformis strain J41TS8]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTCGGGATTGAAGCCTCGGATGACATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCAAGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTTGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAGAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTTCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTTGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCATT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCATCTTTTGATTACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCGTTGACAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTCGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813

Multiple sequence alignment