Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   L6430_RS20040 Genome accession   NZ_AP025342
Coordinates   3996988..3997788 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3991988..4002788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS20010 - 3992966..3993220 (+) 255 WP_020452121.1 DUF2627 domain-containing protein -
  L6430_RS20015 - 3993331..3994056 (-) 726 WP_020452122.1 glycerophosphodiester phosphodiesterase -
  L6430_RS20020 - 3994190..3994810 (-) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase family protein -
  L6430_RS20025 - 3994846..3995151 (-) 306 WP_025811172.1 membrane lipoprotein lipid attachment site-containing protein -
  L6430_RS20030 - 3995651..3996220 (-) 570 WP_020452125.1 serine O-acetyltransferase -
  L6430_RS20035 - 3996350..3996646 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  L6430_RS20040 spo0A 3996988..3997788 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  L6430_RS20045 spoIVB 3998078..3999328 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  L6430_RS20050 recN 3999542..4001272 (-) 1731 WP_079289196.1 DNA repair protein RecN Machinery gene
  L6430_RS20055 ahrC 4001304..4001753 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  L6430_RS20060 - 4001917..4002762 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=91488 L6430_RS20040 WP_003183361.1 3996988..3997788(-) (spo0A) [Bacillus paralicheniformis strain J41TS8]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=91488 L6430_RS20040 WP_003183361.1 3996988..3997788(-) (spo0A) [Bacillus paralicheniformis strain J41TS8]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCGTACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGATGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment