Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   S0I03_RS17215 Genome accession   NZ_CP140613
Coordinates   3488831..3489520 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain WN-I     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483831..3494520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS17180 fliW 3483922..3484353 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  S0I03_RS17185 - 3484383..3484952 (-) 570 WP_003151397.1 DUF6470 family protein -
  S0I03_RS17190 flgL 3485043..3485960 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  S0I03_RS17195 flgK 3485972..3487489 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  S0I03_RS17200 - 3487505..3487987 (-) 483 WP_003151394.1 flagellar protein FlgN -
  S0I03_RS17205 flgM 3488002..3488268 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  S0I03_RS17210 - 3488338..3488757 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  S0I03_RS17215 comFC 3488831..3489520 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  S0I03_RS17220 - 3489526..3489810 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  S0I03_RS17225 comFA 3489868..3491253 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  S0I03_RS17230 - 3491361..3492209 (-) 849 WP_003151387.1 DegV family protein -
  S0I03_RS17235 degU 3492307..3492996 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S0I03_RS17240 degS 3493073..3494236 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=914864 S0I03_RS17215 WP_197535984.1 3488831..3489520(-) (comFC) [Bacillus velezensis strain WN-I]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=914864 S0I03_RS17215 WP_197535984.1 3488831..3489520(-) (comFC) [Bacillus velezensis strain WN-I]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598