Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   S0I03_RS15260 Genome accession   NZ_CP140613
Coordinates   3072963..3073607 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain WN-I     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067963..3078607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS15225 - 3069148..3069579 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  S0I03_RS15230 - 3069579..3069920 (+) 342 WP_014418758.1 Na(+)/H(+) antiporter subunit C -
  S0I03_RS15235 - 3069913..3071394 (+) 1482 WP_032863920.1 Na+/H+ antiporter subunit D -
  S0I03_RS15240 - 3071400..3071876 (+) 477 WP_014418760.1 Na+/H+ antiporter subunit E -
  S0I03_RS15245 - 3071876..3072160 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  S0I03_RS15250 mnhG 3072144..3072518 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  S0I03_RS15255 - 3072558..3072941 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  S0I03_RS15260 comA 3072963..3073607 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  S0I03_RS15265 comP 3073688..3076030 (-) 2343 WP_322787765.1 sensor histidine kinase Regulator
  S0I03_RS15270 comX 3076008..3076178 (-) 171 WP_032863917.1 competence pheromone ComX -
  S0I03_RS15275 - 3076178..3077083 (-) 906 WP_014418764.1 polyprenyl synthetase family protein -
  S0I03_RS15280 degQ 3077235..3077375 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  S0I03_RS15285 - 3077841..3078182 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=914859 S0I03_RS15260 WP_014418762.1 3072963..3073607(-) (comA) [Bacillus velezensis strain WN-I]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=914859 S0I03_RS15260 WP_014418762.1 3072963..3073607(-) (comA) [Bacillus velezensis strain WN-I]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTTCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGTTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86