Detailed information    

insolico Bioinformatically predicted

Overview


Name   nucA/comI   Type   Machinery gene
Locus tag   L6430_RS08590 Genome accession   NZ_AP025342
Coordinates   1682727..1683173 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1677727..1688173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS08565 - 1678334..1679209 (-) 876 WP_059230708.1 transporter substrate-binding domain-containing protein -
  L6430_RS08570 - 1679393..1679944 (+) 552 WP_039073173.1 NAD(P)H-dependent oxidoreductase -
  L6430_RS08575 - 1680040..1680765 (+) 726 WP_020450093.1 AAA family ATPase -
  L6430_RS08580 - 1680835..1682271 (+) 1437 WP_059230706.1 glycoside hydrolase family 1 protein -
  L6430_RS08585 nin/comJ 1682311..1682709 (-) 399 WP_059230704.1 competence protein ComJ Regulator
  L6430_RS08590 nucA/comI 1682727..1683173 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6430_RS08595 - 1683476..1683646 (+) 171 WP_023855671.1 hypothetical protein -
  L6430_RS08600 - 1683652..1684455 (+) 804 WP_059230702.1 serine/threonine protein kinase -
  L6430_RS08605 - 1684779..1685519 (-) 741 WP_059230700.1 ribonuclease YeeF family protein -
  L6430_RS08610 - 1685923..1687977 (+) 2055 WP_059230698.1 hydantoinase/oxoprolinase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=91458 L6430_RS08590 WP_020450096.1 1682727..1683173(-) (nucA/comI) [Bacillus paralicheniformis strain J41TS8]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=91458 L6430_RS08590 WP_020450096.1 1682727..1683173(-) (nucA/comI) [Bacillus paralicheniformis strain J41TS8]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635


Multiple sequence alignment