Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   L6430_RS08585 Genome accession   NZ_AP025342
Coordinates   1682311..1682709 (-) Length   132 a.a.
NCBI ID   WP_059230704.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677311..1687709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS08560 - 1677639..1678322 (-) 684 WP_020450090.1 amino acid ABC transporter permease -
  L6430_RS08565 - 1678334..1679209 (-) 876 WP_059230708.1 transporter substrate-binding domain-containing protein -
  L6430_RS08570 - 1679393..1679944 (+) 552 WP_039073173.1 NAD(P)H-dependent oxidoreductase -
  L6430_RS08575 - 1680040..1680765 (+) 726 WP_020450093.1 AAA family ATPase -
  L6430_RS08580 - 1680835..1682271 (+) 1437 WP_059230706.1 glycoside hydrolase family 1 protein -
  L6430_RS08585 nin/comJ 1682311..1682709 (-) 399 WP_059230704.1 competence protein ComJ Regulator
  L6430_RS08590 nucA/comI 1682727..1683173 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6430_RS08595 - 1683476..1683646 (+) 171 WP_023855671.1 hypothetical protein -
  L6430_RS08600 - 1683652..1684455 (+) 804 WP_059230702.1 serine/threonine protein kinase -
  L6430_RS08605 - 1684779..1685519 (-) 741 WP_059230700.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14929.04 Da        Isoelectric Point: 5.6541

>NTDB_id=91457 L6430_RS08585 WP_059230704.1 1682311..1682709(-) (nin/comJ) [Bacillus paralicheniformis strain J41TS8]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDKSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=91457 L6430_RS08585 WP_059230704.1 1682311..1682709(-) (nin/comJ) [Bacillus paralicheniformis strain J41TS8]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATAAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5

Multiple sequence alignment