Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABXJ29_RS13010 Genome accession   NZ_CP159726
Coordinates   2655560..2656216 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain Z22-7     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650560..2661216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ29_RS12980 (ABXJ29_12985) yecA 2651812..2652477 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  ABXJ29_RS13000 (ABXJ29_13005) pgsA 2653126..2653674 (-) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABXJ29_RS13005 (ABXJ29_13010) uvrC 2653731..2655563 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABXJ29_RS13010 (ABXJ29_13015) letA 2655560..2656216 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABXJ29_RS13015 (ABXJ29_13020) - 2656358..2656429 (+) 72 Protein_2484 transcriptional regulator -
  ABXJ29_RS13020 (ABXJ29_13025) yecU 2656512..2656688 (+) 177 WP_000590347.1 protein YecU -
  ABXJ29_RS13025 (ABXJ29_13030) yecF 2656675..2656899 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABXJ29_RS13030 (ABXJ29_13035) sdiA 2656966..2657688 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  ABXJ29_RS13035 (ABXJ29_13040) tcyN 2657918..2658670 (-) 753 WP_001272986.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABXJ29_RS13040 (ABXJ29_13045) tcyL 2658667..2659335 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  ABXJ29_RS13045 (ABXJ29_13050) dcyD 2659350..2660336 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=914536 ABXJ29_RS13010 WP_000611335.1 2655560..2656216(-) (letA) [Escherichia coli strain Z22-7]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=914536 ABXJ29_RS13010 WP_000611335.1 2655560..2656216(-) (letA) [Escherichia coli strain Z22-7]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486