Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SPH25_RS06855 Genome accession   NZ_CP140484
Coordinates   1425245..1425820 (-) Length   191 a.a.
NCBI ID   WP_001203570.1    Uniprot ID   -
Organism   Helicobacter pylori strain 52N     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420245..1430820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH25_RS06830 - 1421904..1422446 (-) 543 WP_244756807.1 restriction endonuclease subunit S -
  SPH25_RS06835 - 1422473..1423027 (-) 555 WP_322536506.1 restriction endonuclease subunit S -
  SPH25_RS06840 - 1423077..1424108 (+) 1032 WP_014533550.1 DNA cytosine methyltransferase -
  SPH25_RS06845 - 1424077..1424844 (+) 768 WP_001183570.1 Eco47II family restriction endonuclease -
  SPH25_RS06850 - 1424850..1425212 (-) 363 Protein_1332 N-6 DNA methylase -
  SPH25_RS06855 comFC 1425245..1425820 (-) 576 WP_001203570.1 ComF family protein Machinery gene
  SPH25_RS06860 tmk 1425808..1426383 (-) 576 WP_000289725.1 dTMP kinase -
  SPH25_RS06865 coaD 1426385..1426858 (-) 474 WP_001169261.1 pantetheine-phosphate adenylyltransferase -
  SPH25_RS06870 - 1426858..1427421 (-) 564 WP_000780134.1 UbiX family flavin prenyltransferase -
  SPH25_RS06875 flgA 1427431..1428087 (-) 657 WP_000697662.1 flagellar basal body P-ring formation chaperone FlgA -
  SPH25_RS06880 uvrD 1428084..1430129 (-) 2046 WP_000345180.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21350.96 Da        Isoelectric Point: 9.0901

>NTDB_id=914472 SPH25_RS06855 WP_001203570.1 1425245..1425820(-) (comFC) [Helicobacter pylori strain 52N]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=914472 SPH25_RS06855 WP_001203570.1 1425245..1425820(-) (comFC) [Helicobacter pylori strain 52N]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366