Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SPG78_RS07010 Genome accession   NZ_CP140483
Coordinates   1441105..1441680 (-) Length   191 a.a.
NCBI ID   WP_001203550.1    Uniprot ID   -
Organism   Helicobacter pylori strain 51N     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436105..1446680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG78_RS07000 - 1437699..1439036 (-) 1338 WP_375022704.1 restriction endonuclease subunit S -
  SPG78_RS07005 - 1439033..1441072 (-) 2040 WP_001147695.1 class I SAM-dependent DNA methyltransferase -
  SPG78_RS07010 comFC 1441105..1441680 (-) 576 WP_001203550.1 ComF family protein Machinery gene
  SPG78_RS07015 tmk 1441668..1442243 (-) 576 WP_000289742.1 dTMP kinase -
  SPG78_RS07020 coaD 1442245..1442718 (-) 474 WP_001169265.1 pantetheine-phosphate adenylyltransferase -
  SPG78_RS07025 - 1442718..1443281 (-) 564 WP_000780123.1 UbiX family flavin prenyltransferase -
  SPG78_RS07030 flgA 1443291..1443947 (-) 657 WP_000697663.1 flagellar basal body P-ring formation chaperone FlgA -
  SPG78_RS07035 uvrD 1443944..1445989 (-) 2046 WP_000345170.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21354.00 Da        Isoelectric Point: 9.4390

>NTDB_id=914452 SPG78_RS07010 WP_001203550.1 1441105..1441680(-) (comFC) [Helicobacter pylori strain 51N]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=914452 SPG78_RS07010 WP_001203550.1 1441105..1441680(-) (comFC) [Helicobacter pylori strain 51N]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

38.144

100

0.387