Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   L6430_RS03625 Genome accession   NZ_AP025342
Coordinates   690285..690974 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain J41TS8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 685285..695974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS03590 - 685457..685933 (-) 477 WP_059231003.1 flagellar protein FlgN -
  L6430_RS03595 flgM 685951..686217 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  L6430_RS03600 - 686297..686716 (-) 420 WP_059231007.1 TIGR03826 family flagellar region protein -
  L6430_RS03605 comFC 686775..687509 (-) 735 WP_059231009.1 amidophosphoribosyltransferase Machinery gene
  L6430_RS03610 - 687466..687750 (-) 285 WP_059231011.1 late competence development ComFB family protein -
  L6430_RS03615 comFA 687805..689199 (-) 1395 WP_081303611.1 DEAD/DEAH box helicase Machinery gene
  L6430_RS03620 - 689323..690165 (-) 843 WP_059231013.1 DegV family protein -
  L6430_RS03625 degU 690285..690974 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  L6430_RS03630 degS 691056..692213 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  L6430_RS03635 - 692436..693074 (+) 639 WP_059231015.1 YigZ family protein -
  L6430_RS03640 - 693089..694168 (+) 1080 WP_059231019.1 LCP family protein -
  L6430_RS03645 - 694253..694627 (-) 375 Protein_707 YunG family protein -
  L6430_RS03650 - 694754..695818 (-) 1065 WP_065644252.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=91442 L6430_RS03625 WP_003185730.1 690285..690974(-) (degU) [Bacillus paralicheniformis strain J41TS8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=91442 L6430_RS03625 WP_003185730.1 690285..690974(-) (degU) [Bacillus paralicheniformis strain J41TS8]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTCA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTGGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACGCATA
ATCTTGTGAATGAATTCCGCCGACTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTCCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment