Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L6430_RS03615 Genome accession   NZ_AP025342
Coordinates   687805..689199 (-) Length   464 a.a.
NCBI ID   WP_081303611.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682805..694199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS03580 flgL 682996..683907 (-) 912 WP_065644253.1 flagellar hook-associated protein FlgL -
  L6430_RS03585 flgK 683918..685441 (-) 1524 WP_059231001.1 flagellar hook-associated protein FlgK -
  L6430_RS03590 - 685457..685933 (-) 477 WP_059231003.1 flagellar protein FlgN -
  L6430_RS03595 flgM 685951..686217 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  L6430_RS03600 - 686297..686716 (-) 420 WP_059231007.1 TIGR03826 family flagellar region protein -
  L6430_RS03605 comFC 686775..687509 (-) 735 WP_059231009.1 amidophosphoribosyltransferase Machinery gene
  L6430_RS03610 - 687466..687750 (-) 285 WP_059231011.1 late competence development ComFB family protein -
  L6430_RS03615 comFA 687805..689199 (-) 1395 WP_081303611.1 DEAD/DEAH box helicase Machinery gene
  L6430_RS03620 - 689323..690165 (-) 843 WP_059231013.1 DegV family protein -
  L6430_RS03625 degU 690285..690974 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  L6430_RS03630 degS 691056..692213 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  L6430_RS03635 - 692436..693074 (+) 639 WP_059231015.1 YigZ family protein -
  L6430_RS03640 - 693089..694168 (+) 1080 WP_059231019.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52873.43 Da        Isoelectric Point: 9.6793

>NTDB_id=91441 L6430_RS03615 WP_081303611.1 687805..689199(-) (comFA) [Bacillus paralicheniformis strain J41TS8]
MIHIEHPASYSRELRSCMEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCYRCGQHERSCFARYPCYRCNK
SCVYCRACVMMGRVSECTPLLTWREHGIHEWAPVYTEWKGALSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELAPRFRHAFPGVEIAALYGGSSDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKQQSAHIYLTATPSADMKKRAESGKLHTVRIPARFHRSPLPQPTLIWCGNWERGLKRKKVPFRLK
KWLFKHKELQHPVFMFVPSVPVLKTVVSLLKKETFRAEGVYSEDPERNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAIFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKAMNAAQRHIQHMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=91441 L6430_RS03615 WP_081303611.1 687805..689199(-) (comFA) [Bacillus paralicheniformis strain J41TS8]
GTGATTCACATCGAACATCCGGCATCCTATTCCCGTGAATTGCGGTCATGTATGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCACATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTATAGGTGCGGCCAGCACGAGCGCTCATGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TCCTGCGTGTACTGCCGAGCCTGCGTCATGATGGGCAGGGTGAGCGAGTGTACCCCTCTGTTGACTTGGCGTGAGCATGG
CATACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGCACTTTCAGCCGGTCAGGAAAAAGCGGCCAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGGTCGGGAAAAACAGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTCGAGCTTGCTCCGCG
GTTTCGCCACGCCTTCCCAGGGGTGGAAATCGCCGCTTTATACGGAGGGAGCTCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACAGCAAAGCGCACACATCTATTTGACCGCCAC
GCCTTCTGCGGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CGCTGCCTCAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAAAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACAAAGAACTGCAGCATCCGGTTTTTATGTTCGTTCCCTCTGTCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCTGAAGGGGTCTATTCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGATTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGCAGGACAAAGGCGATGAATGCGGCACAACGTCATATTCAACATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(321-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.769

98.707

0.56

Multiple sequence alignment