Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U2T01_RS02335 Genome accession   NZ_CP140438
Coordinates   347874..348692 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2023CK-01292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342874..353692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2T01_RS02300 (U2T01_02305) - 343456..343586 (-) 131 Protein_308 hypothetical protein -
  U2T01_RS02305 (U2T01_02310) rpoZ 343625..343903 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U2T01_RS02310 (U2T01_02315) gmk 343976..344605 (-) 630 WP_000015937.1 guanylate kinase -
  U2T01_RS02315 (U2T01_02320) ispH 344728..345678 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U2T01_RS02320 (U2T01_02325) fimU 345848..346321 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U2T01_RS02325 (U2T01_02330) pilV 346315..346875 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  U2T01_RS02330 (U2T01_02335) pilW 346876..347877 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  U2T01_RS02335 (U2T01_02340) pilX 347874..348692 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U2T01_RS02340 (U2T01_02345) pilY1 348704..352558 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  U2T01_RS02345 (U2T01_02350) pilY2 352571..353053 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  U2T01_RS02350 (U2T01_02355) pilE 353050..353475 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=914316 U2T01_RS02335 WP_000149374.1 347874..348692(+) (pilX) [Acinetobacter baumannii strain 2023CK-01292]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=914316 U2T01_RS02335 WP_000149374.1 347874..348692(+) (pilX) [Acinetobacter baumannii strain 2023CK-01292]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993