Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U2T01_RS02320 Genome accession   NZ_CP140438
Coordinates   345848..346321 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 2023CK-01292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340848..351321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2T01_RS02295 (U2T01_02300) - 341311..343416 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  U2T01_RS02300 (U2T01_02305) - 343456..343586 (-) 131 Protein_308 hypothetical protein -
  U2T01_RS02305 (U2T01_02310) rpoZ 343625..343903 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U2T01_RS02310 (U2T01_02315) gmk 343976..344605 (-) 630 WP_000015937.1 guanylate kinase -
  U2T01_RS02315 (U2T01_02320) ispH 344728..345678 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U2T01_RS02320 (U2T01_02325) fimU 345848..346321 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U2T01_RS02325 (U2T01_02330) pilV 346315..346875 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  U2T01_RS02330 (U2T01_02335) pilW 346876..347877 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  U2T01_RS02335 (U2T01_02340) pilX 347874..348692 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=914313 U2T01_RS02320 WP_001214065.1 345848..346321(+) (fimU) [Acinetobacter baumannii strain 2023CK-01292]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=914313 U2T01_RS02320 WP_001214065.1 345848..346321(+) (fimU) [Acinetobacter baumannii strain 2023CK-01292]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1