Detailed information NTG0091427

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABK14_RS09805
• Genome accession: NZ_AP027886
• Coordinates: 2003279..2004271 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-05-5CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1998279..2009271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK14_RS09785 (VEE47_18920)	otnK	1999054..2000316 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
AABK14_RS09790 (VEE47_18930)	ygbL	2000313..2000951 (+)	639	WP_001278994.1	aldolase	-
AABK14_RS09795 (VEE47_18940)	ygbM	2000956..2001732 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AABK14_RS09800 (VEE47_18950)	ygbN	2001821..2003185 (+)	1365	WP_000104459.1	GntP family transporter	-
AABK14_RS09805 (VEE47_18960)	rpoS	2003279..2004271 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AABK14_RS09810 (VEE47_18970)	nlpD	2004334..2005428 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AABK14_RS09815 (VEE47_18980)	pcm	2005613..2006239 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AABK14_RS09820 (VEE47_18990)	surE	2006233..2006994 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AABK14_RS09825 (VEE47_19000)	truD	2006975..2008024 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AABK14_RS09830 (VEE47_19010)	ispF	2008021..2008500 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABK14_RS09835 (VEE47_19020)	ispD	2008500..2009210 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=91427 AABK14_RS09805 WP_000081550.1 2003279..2004271(-) (rpoS) [Escherichia coli strain 2018-05-5CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=91427 AABK14_RS09805 WP_000081550.1 2003279..2004271(-) (rpoS) [Escherichia coli strain 2018-05-5CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715