Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L6450_RS19790 Genome accession   NZ_AP025340
Coordinates   3896950..3897396 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J36TS2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3891950..3902396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS19765 - 3892557..3893432 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  L6450_RS19770 - 3893616..3894167 (+) 552 WP_020450092.1 NAD(P)H-dependent oxidoreductase -
  L6450_RS19775 - 3894263..3894988 (+) 726 WP_020450093.1 AAA family ATPase -
  L6450_RS19780 - 3895058..3896494 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  L6450_RS19785 nin/comJ 3896534..3896932 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  L6450_RS19790 nucA/comI 3896950..3897396 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6450_RS19795 - 3897699..3897869 (+) 171 WP_023855671.1 hypothetical protein -
  L6450_RS19800 - 3897875..3898678 (+) 804 WP_025810788.1 serine/threonine protein kinase -
  L6450_RS19805 - 3899083..3899823 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -
  L6450_RS19810 - 3900227..3902281 (+) 2055 WP_020450099.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=91427 L6450_RS19790 WP_020450096.1 3896950..3897396(-) (nucA/comI) [Bacillus paralicheniformis strain J36TS2]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=91427 L6450_RS19790 WP_020450096.1 3896950..3897396(-) (nucA/comI) [Bacillus paralicheniformis strain J36TS2]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment