Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   L6450_RS19785 Genome accession   NZ_AP025340
Coordinates   3896534..3896932 (-) Length   132 a.a.
NCBI ID   WP_023855672.1    Uniprot ID   A0AAW6KF42
Organism   Bacillus paralicheniformis strain J36TS2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3891534..3901932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS19755 - 3891542..3891703 (+) 162 WP_023855674.1 hypothetical protein -
  L6450_RS19760 - 3891862..3892545 (-) 684 WP_020450090.1 amino acid ABC transporter permease -
  L6450_RS19765 - 3892557..3893432 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  L6450_RS19770 - 3893616..3894167 (+) 552 WP_020450092.1 NAD(P)H-dependent oxidoreductase -
  L6450_RS19775 - 3894263..3894988 (+) 726 WP_020450093.1 AAA family ATPase -
  L6450_RS19780 - 3895058..3896494 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  L6450_RS19785 nin/comJ 3896534..3896932 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  L6450_RS19790 nucA/comI 3896950..3897396 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L6450_RS19795 - 3897699..3897869 (+) 171 WP_023855671.1 hypothetical protein -
  L6450_RS19800 - 3897875..3898678 (+) 804 WP_025810788.1 serine/threonine protein kinase -
  L6450_RS19805 - 3899083..3899823 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14928.99 Da        Isoelectric Point: 5.1700

>NTDB_id=91426 L6450_RS19785 WP_023855672.1 3896534..3896932(-) (nin/comJ) [Bacillus paralicheniformis strain J36TS2]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=91426 L6450_RS19785 WP_023855672.1 3896534..3896932(-) (nin/comJ) [Bacillus paralicheniformis strain J36TS2]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5

Multiple sequence alignment