Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U2S75_RS17745 Genome accession   NZ_CP140420
Coordinates   3715584..3716219 (+) Length   211 a.a.
NCBI ID   WP_000472270.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3710584..3721219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS17730 (U2S75_17725) adeT2 3711644..3712630 (-) 987 WP_064193071.1 putative multidrug efflux protein AdeT2 -
  U2S75_RS17735 (U2S75_17730) - 3712710..3713525 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  U2S75_RS17740 (U2S75_17735) recG 3713546..3715591 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  U2S75_RS17745 (U2S75_17740) comF 3715584..3716219 (+) 636 WP_000472270.1 ComF family protein Machinery gene
  U2S75_RS17750 (U2S75_17745) - 3716222..3716623 (-) 402 WP_057054116.1 NUDIX domain-containing protein -
  U2S75_RS17755 (U2S75_17750) - 3716638..3717219 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  U2S75_RS17760 (U2S75_17755) - 3717377..3718390 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  U2S75_RS17765 (U2S75_17760) - 3718460..3718747 (-) 288 WP_064193072.1 lipid asymmetry maintenance protein MlaB -
  U2S75_RS17770 (U2S75_17765) - 3718759..3719400 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  U2S75_RS17775 (U2S75_17770) - 3719427..3720107 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  U2S75_RS17780 (U2S75_17775) mlaE 3720107..3720883 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24581.75 Da        Isoelectric Point: 9.5738

>NTDB_id=914188 U2S75_RS17745 WP_000472270.1 3715584..3716219(+) (comF) [Acinetobacter baumannii strain 2023CK-00893]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=914188 U2S75_RS17745 WP_000472270.1 3715584..3716219(+) (comF) [Acinetobacter baumannii strain 2023CK-00893]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAAAGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986