Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U2S75_RS09150 Genome accession   NZ_CP140420
Coordinates   1909646..1910026 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904646..1915026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS09120 (U2S75_09115) kdsB 1905549..1906310 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U2S75_RS09125 (U2S75_09120) - 1906322..1907302 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  U2S75_RS09130 (U2S75_09125) - 1907314..1907655 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  U2S75_RS09135 (U2S75_09130) - 1907673..1908446 (+) 774 WP_064192512.1 TatD family hydrolase -
  U2S75_RS09140 (U2S75_09135) - 1908484..1909092 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  U2S75_RS09145 (U2S75_09140) - 1909102..1909656 (+) 555 WP_000841373.1 type II secretion system protein -
  U2S75_RS09150 (U2S75_09145) xcpV 1909646..1910026 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  U2S75_RS09155 (U2S75_09150) xcpW 1910026..1910727 (+) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U2S75_RS09160 (U2S75_09155) gspK 1910727..1911686 (+) 960 WP_064194333.1 type II secretion system minor pseudopilin GspK -
  U2S75_RS09165 (U2S75_09160) - 1911916..1912512 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  U2S75_RS09170 (U2S75_09165) ung 1912563..1913276 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  U2S75_RS09175 (U2S75_09170) - 1913273..1914397 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  U2S75_RS09180 (U2S75_09175) tadA 1914404..1914908 (+) 505 Protein_1796 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=914179 U2S75_RS09150 WP_000836911.1 1909646..1910026(+) (xcpV) [Acinetobacter baumannii strain 2023CK-00893]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=914179 U2S75_RS09150 WP_000836911.1 1909646..1910026(+) (xcpV) [Acinetobacter baumannii strain 2023CK-00893]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1