Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABXJ13_RS15380 Genome accession   NZ_CP159689
Coordinates   3075127..3075783 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain Z142-6     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070127..3080783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ13_RS15345 (ABXJ13_15345) dcyD 3071007..3071993 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ABXJ13_RS15350 (ABXJ13_15350) tcyL 3072008..3072676 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABXJ13_RS15355 (ABXJ13_15355) tcyN 3072673..3073425 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABXJ13_RS15360 (ABXJ13_15360) sdiA 3073655..3074377 (+) 723 WP_001154276.1 transcriptional regulator SdiA -
  ABXJ13_RS15365 (ABXJ13_15365) yecF 3074444..3074668 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABXJ13_RS15370 (ABXJ13_15370) yecU 3074655..3074831 (-) 177 WP_000590347.1 protein YecU -
  ABXJ13_RS15375 (ABXJ13_15375) - 3074914..3074985 (-) 72 Protein_2881 transcriptional regulator -
  ABXJ13_RS15380 (ABXJ13_15380) letA 3075127..3075783 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABXJ13_RS15385 (ABXJ13_15385) uvrC 3075780..3077612 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABXJ13_RS15390 (ABXJ13_15390) pgsA 3077669..3078217 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABXJ13_RS15410 (ABXJ13_15410) yecA 3078867..3079532 (+) 666 WP_000847911.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=914078 ABXJ13_RS15380 WP_000611335.1 3075127..3075783(+) (letA) [Escherichia coli strain Z142-6]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=914078 ABXJ13_RS15380 WP_000611335.1 3075127..3075783(+) (letA) [Escherichia coli strain Z142-6]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGAGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTTAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCAGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACTAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486