Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U2S77_RS03135 Genome accession   NZ_CP140386
Coordinates   595886..596659 (+) Length   257 a.a.
NCBI ID   WP_002926145.1    Uniprot ID   A0A5T0LSV7
Organism   Campylobacter jejuni strain PNUSAC037670     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 590886..601659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S77_RS03120 (U2S77_03120) - 591735..593669 (-) 1935 WP_002926153.1 RNB domain-containing ribonuclease -
  U2S77_RS03125 (U2S77_03125) ilvC 593788..594810 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  U2S77_RS03130 (U2S77_03130) - 594814..595896 (+) 1083 WP_002931136.1 divergent polysaccharide deacetylase family protein -
  U2S77_RS03135 (U2S77_03135) dprA 595886..596659 (+) 774 WP_002926145.1 DNA-processing protein DprA Machinery gene
  U2S77_RS03140 (U2S77_03140) ruvX 596656..597039 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  U2S77_RS03145 (U2S77_03145) - 597068..597907 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  U2S77_RS03150 (U2S77_03150) msrA 598083..598580 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  U2S77_RS03155 (U2S77_03155) ppa 598621..599139 (-) 519 WP_002855031.1 inorganic diphosphatase -
  U2S77_RS03160 (U2S77_03160) adk 599149..599727 (-) 579 WP_002855137.1 adenylate kinase -
  U2S77_RS03165 (U2S77_03165) aspS 599724..601475 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28730.50 Da        Isoelectric Point: 7.6510

>NTDB_id=913897 U2S77_RS03135 WP_002926145.1 595886..596659(+) (dprA) [Campylobacter jejuni strain PNUSAC037670]
MASEILSDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=913897 U2S77_RS03135 WP_002926145.1 595886..596659(+) (dprA) [Campylobacter jejuni strain PNUSAC037670]
ATGGCAAGTGAAATTTTGTCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0LSV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.438

99.611

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459