Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   U2S96_RS05690 Genome accession   NZ_CP140370
Coordinates   1091012..1091965 (+) Length   317 a.a.
NCBI ID   WP_052853944.1    Uniprot ID   A0A1J6QE79
Organism   Campylobacter jejuni strain PNUSAC040311     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086012..1096965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S96_RS05660 (U2S96_05660) neuC 1086588..1087712 (+) 1125 WP_052853946.1 UDP-N-acetylglucosamine 2-epimerase -
  U2S96_RS05665 (U2S96_05665) - 1087705..1088322 (+) 618 WP_016818193.1 glycosyltransferase -
  U2S96_RS05670 (U2S96_05670) - 1088319..1088651 (+) 333 WP_019260376.1 hypothetical protein -
  U2S96_RS05675 (U2S96_05675) - 1088648..1089313 (+) 666 WP_002869017.1 cytidylyltransferase domain-containing protein -
  U2S96_RS05680 (U2S96_05680) - 1089301..1090134 (+) 834 WP_322631826.1 CatB-related O-acetyltransferase -
  U2S96_RS05685 (U2S96_05685) - 1090126..1090953 (-) 828 WP_002869015.1 glycosyltransferase family 2 protein -
  U2S96_RS05690 (U2S96_05690) waaF 1091012..1091965 (+) 954 WP_052853944.1 glycosyltransferase family 9 protein Regulator
  U2S96_RS05695 (U2S96_05695) - 1091972..1092727 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  U2S96_RS05700 (U2S96_05700) gmhA 1092727..1093287 (-) 561 WP_002869012.1 D-sedoheptulose 7-phosphate isomerase -
  U2S96_RS05705 (U2S96_05705) rfaE1 1093284..1094669 (-) 1386 WP_322631827.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  U2S96_RS05710 (U2S96_05710) rfaD 1094662..1095615 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  U2S96_RS05715 (U2S96_05715) gmhB 1095616..1096176 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  U2S96_RS05720 (U2S96_05720) - 1096258..1096560 (+) 303 WP_002852762.1 c-type cytochrome -
  U2S96_RS05725 (U2S96_05725) ccoS 1096583..1096789 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36556.21 Da        Isoelectric Point: 10.3630

>NTDB_id=913795 U2S96_RS05690 WP_052853944.1 1091012..1091965(+) (waaF) [Campylobacter jejuni strain PNUSAC040311]
MKIFIHLPTWLGDAVMASPALYAIKKHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=913795 U2S96_RS05690 WP_052853944.1 1091012..1091965(+) (waaF) [Campylobacter jejuni strain PNUSAC040311]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAAAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6QE79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.312

99.054

0.924