Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABXJ28_RS20890 Genome accession   NZ_CP159641
Coordinates   4176395..4177051 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain Z226-6     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4171395..4182051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ28_RS20855 (ABXJ28_20855) dcyD 4172274..4173260 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ABXJ28_RS20860 (ABXJ28_20860) tcyL 4173275..4173943 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABXJ28_RS20865 (ABXJ28_20865) tcyN 4173940..4174692 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABXJ28_RS20870 (ABXJ28_20870) sdiA 4174922..4175644 (+) 723 WP_354142750.1 transcriptional regulator SdiA -
  ABXJ28_RS20875 (ABXJ28_20875) yecF 4175712..4175936 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABXJ28_RS20880 (ABXJ28_20880) yecU 4175923..4176099 (-) 177 WP_000590344.1 protein YecU -
  ABXJ28_RS20885 (ABXJ28_20885) - 4176137..4176253 (-) 117 Protein_3958 transcriptional regulator -
  ABXJ28_RS20890 (ABXJ28_20890) letA 4176395..4177051 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABXJ28_RS20895 (ABXJ28_20895) uvrC 4177048..4178880 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABXJ28_RS20900 (ABXJ28_20900) pgsA 4178937..4179485 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABXJ28_RS20920 (ABXJ28_20920) yecA 4180135..4180800 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=913779 ABXJ28_RS20890 WP_000611336.1 4176395..4177051(+) (letA) [Escherichia coli strain Z226-6]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=913779 ABXJ28_RS20890 WP_000611336.1 4176395..4177051(+) (letA) [Escherichia coli strain Z226-6]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486