Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ABXJ10_RS00100 Genome accession   NZ_CP159639
Coordinates   18486..19895 (-) Length   469 a.a.
NCBI ID   WP_022646353.1    Uniprot ID   -
Organism   Escherichia coli strain Z226-7     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 13486..24895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ10_RS00075 (ABXJ10_00075) yihA 14750..15382 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABXJ10_RS00080 (ABXJ10_00080) - 15679..15845 (+) 167 Protein_9 hypothetical protein -
  ABXJ10_RS00085 (ABXJ10_00085) yihI 15964..16473 (+) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  ABXJ10_RS00090 (ABXJ10_00090) hemN 16662..18035 (+) 1374 WP_001590951.1 oxygen-independent coproporphyrinogen III oxidase -
  ABXJ10_RS00095 (ABXJ10_00095) yshB 18264..18374 (-) 111 WP_000893994.1 YshB family small membrane protein -
  ABXJ10_RS00100 (ABXJ10_00100) luxO 18486..19895 (-) 1410 WP_022646353.1 nitrogen regulation protein NR(I) Regulator
  ABXJ10_RS00105 (ABXJ10_00105) glnL 19907..20956 (-) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  ABXJ10_RS00110 (ABXJ10_00110) glnA 21130..22539 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  ABXJ10_RS00115 (ABXJ10_00115) typA 22912..24735 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52261.73 Da        Isoelectric Point: 6.4081

>NTDB_id=913623 ABXJ10_RS00100 WP_022646353.1 18486..19895(-) (luxO) [Escherichia coli strain Z226-7]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LAHHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=913623 ABXJ10_RS00100 WP_022646353.1 18486..19895(-) (luxO) [Escherichia coli strain Z226-7]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGACTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGCGGCACGTTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCACCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGTGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACACCATTTTTTACAAGTTGCTGCTCGCGAGCTGGGCGTAGAAGCAAAGTTGCTGCATCCGGAAACTGAAGCCGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACCGTACCGGAAAGCACTTCACAAATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGATCGGGCGCTACGTTCCGGTCATCAAAACTTGCTGTCTGAAGCGCAACC
AGAGTTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGAATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39