Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   U3Q39_RS18395 Genome accession   NZ_CP140298
Coordinates   3914238..3915830 (+) Length   530 a.a.
NCBI ID   WP_013984075.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain MJL19     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3909238..3920830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3Q39_RS18375 (U3Q39_018375) pgeF 3910991..3911728 (-) 738 WP_170800689.1 peptidoglycan editing factor PgeF -
  U3Q39_RS18380 (U3Q39_018380) rluD 3911725..3912699 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U3Q39_RS18385 (U3Q39_018385) - 3912904..3913893 (+) 990 WP_048329921.1 outer membrane protein assembly factor BamD -
  U3Q39_RS18390 (U3Q39_018390) - 3914015..3914248 (+) 234 WP_013984074.1 PP0621 family protein -
  U3Q39_RS18395 (U3Q39_018395) pilS 3914238..3915830 (+) 1593 WP_013984075.1 sensor histidine kinase Regulator
  U3Q39_RS18400 (U3Q39_018400) pilR 3915961..3917298 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  U3Q39_RS18405 (U3Q39_018405) - 3917342..3918400 (-) 1059 WP_011914666.1 DUF2333 family protein -
  U3Q39_RS18410 (U3Q39_018410) - 3918618..3920213 (+) 1596 WP_014597755.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58892.95 Da        Isoelectric Point: 7.8561

>NTDB_id=913606 U3Q39_RS18395 WP_013984075.1 3914238..3915830(+) (pilS) [Stutzerimonas stutzeri strain MJL19]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=913606 U3Q39_RS18395 WP_013984075.1 3914238..3915830(+) (pilS) [Stutzerimonas stutzeri strain MJL19]
GTGGGCACTGAGAACCTCACCTTCTTCGGCGACCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGCCGTTCCGAAGCCAGCAGCCAGTACGTCCAGGCCGGTGCGCTCGGC
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGAGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGTCTCGCG
CCACGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAACTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
GCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGCTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGCAAAGGCACCGGGCTCGGGCTGTACATCTCTCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666